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hsp90aa1.2 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2 [ Danio rerio (zebrafish) ]

Gene ID: 565155, updated on 17-Nov-2020

Summary

Official Symbol
hsp90aa1.2provided by ZNC
Official Full Name
heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-031001-3
See related
Ensembl:ENSDARG00000024746
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
hsp9; cb820; hsp90; hsp90a2; hsp90a.2
Orthologs

Genomic context

See hsp90aa1.2 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (53967596..53981618, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (54178150..54192172, complement)
103 previous assembly Zv9 (GCF_000002035.4) 20 NC_007131.5 (54322501..54336773, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438168 Neighboring gene protein phosphatase 2, regulatory subunit B', gamma b Neighboring gene heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 Neighboring gene si:dkey-241l7.6

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATP binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ATP binding IEA
Inferred from Electronic Annotation
more info
 
disordered domain specific binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
unfolded protein binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cellular response to heat IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein folding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein folding IEA
Inferred from Electronic Annotation
more info
 
protein stabilization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
response to antibiotic ISS
Inferred from Sequence or Structural Similarity
more info
 
response to cold ISS
Inferred from Sequence or Structural Similarity
more info
 
response to heat ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
cell surface IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
myelin sheath IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
neuronal cell body IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 
perinuclear region of cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein-containing complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2
Names
heat shock protein 90-alpha 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045073.1NP_001038538.1  heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2

    See identical proteins and their annotated locations for NP_001038538.1

    Status: PROVISIONAL

    Source sequence(s)
    CR381646
    UniProtKB/TrEMBL
    Q5RG12
    Related
    ENSDARP00000026065.8, ENSDART00000023550.11
    Conserved Domains (3) summary
    smart00387
    Location:38189
    HATPase_c; Histidine kinase-like ATPases
    PTZ00272
    Location:16734
    PTZ00272; heat shock protein 83 kDa (Hsp83); Provisional
    pfam00183
    Location:194724
    HSP90; Hsp90 protein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    53967596..53981618 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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