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LMJF_18_1070 putative vacuolar protein sorting complex subunit [ Leishmania major strain Friedlin ]

Gene ID: 5651035, updated on 21-Dec-2023

Summary

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Gene symbol
LMJF_18_1070
Gene description
putative vacuolar protein sorting complex subunit
Locus tag
LMJF_18_1070
Gene type
protein coding
RNA name
putative vacuolar protein sorting complex subunit
RefSeq status
PROVISIONAL
Organism
Leishmania major strain Friedlin (strain: Friedlin)
Lineage
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania
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Genomic context

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Location:
chromosome: 18
Exon count:
1
Sequence:
Chromosome: 18; NC_007259.2 (453209..455698)

Chromosome 18 - NC_007259.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene putative calpain-like cysteine peptidase Neighboring gene protein kinase A catalytic subunit Neighboring gene putative cAMP phosphodiesterase A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007259.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the kinetoplastid parasite, Leishmania major. Ivens AC, et al. Science, 2005 Jul 15. PMID 16020728, Free PMC Article
  2. Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Rogers MB, et al. Genome Res, 2011 Dec. PMID 22038252, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuole fusion, non-autophagic IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of HOPS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
putative vacuolar protein sorting complex subunit

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007259.2 Reference assembly

    Range
    453209..455698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001682461.1 → XP_001682513.1  putative vacuolar protein sorting complex subunit [Leishmania major strain Friedlin]

    See identical proteins and their annotated locations for XP_001682513.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q4QDT5
    Conserved Domains (2) summary
    pfam04841
    Location:1 → 346
    Vps16_N; Vps16, N-terminal region
    pfam04840
    Location:456 → 807
    Vps16_C; Vps16, C-terminal region
Nucleotide Protein
Heading Accession and Version

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