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roraa RAR-related orphan receptor A, paralog a [ Danio rerio (zebrafish) ]

Gene ID: 564951, updated on 3-Oct-2019

Summary

Official Symbol
roraaprovided by ZNC
Official Full Name
RAR-related orphan receptor A, paralog aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060306-2
See related
Ensembl:ENSDARG00000031768
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
rora2; RORalpha-B; gb:dq017624
Orthologs

Genomic context

See roraa in Genome Data Viewer
Location:
chromosome: 25
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (33501643..33969724)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (33121834..33479194)
103 previous assembly Zv9 (GCF_000002035.4) 25 NC_007136.5 (34896405..35010022)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene tropomyosin 1 (alpha) Neighboring gene lactamase, beta Neighboring gene interactor of little elongator complex ELL subunit 2 Neighboring gene annexin A2a

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
steroid hormone receptor activity IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cerebellum morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
positive regulation of gene expression IDA
Inferred from Direct Assay
more info
PubMed 
regulation of gene expression IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
rhythmic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
nuclear receptor ROR-alpha A; nuclear receptor ROR-alpha
Names
NR1F1-B
retinoid-related orphan receptor alpha 2
retinoid-related orphan receptor-alpha A
rora

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110167.1NP_001103637.1  nuclear receptor ROR-alpha A

    See identical proteins and their annotated locations for NP_001103637.1

    Status: PROVISIONAL

    Source sequence(s)
    AB298802
    UniProtKB/TrEMBL
    A7VL70
    Related
    ENSDARP00000106236.2, ENSDART00000121449.3
    Conserved Domains (2) summary
    cd06939
    Location:217456
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:11105
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    33501643..33969724
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017354088.2XP_017209577.1  nuclear receptor ROR-alpha isoform X1

    Related
    ENSDARP00000124850.1, ENSDART00000148537.3
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