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Copz1 coatomer protein complex, subunit zeta 1 [ Mus musculus (house mouse) ]

Gene ID: 56447, updated on 9-Sep-2018

Summary

Official Symbol
Copz1provided by MGI
Official Full Name
coatomer protein complex, subunit zeta 1provided by MGI
Primary source
MGI:MGI:1929063
See related
Ensembl:ENSMUSG00000060992
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AA407760; D4Ertd360e; 5930435A22Rik
Expression
Ubiquitous expression in large intestine adult (RPKM 79.6), liver E14.5 (RPKM 69.6) and 28 other tissues See more
Orthologs

Genomic context

See Copz1 in Genome Data Viewer
Location:
15 F3; 15 58.74 cM
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (103272834..103299869)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (103103349..103130296)

Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1 Neighboring gene nuclear factor, erythroid derived 2 Neighboring gene microRNA 148b Neighboring gene predicted gene, 41406 Neighboring gene G protein-coupled receptor 84 Neighboring gene zinc finger protein 385A

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC118060

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
intra-Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
intra-Golgi vesicle-mediated transport ISO
Inferred from Sequence Orthology
more info
 
intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein transport IEA
Inferred from Electronic Annotation
more info
 
retrograde vesicle-mediated transport, Golgi to ER IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
toxin transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
COPI vesicle coat IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
COPI vesicle coat ISO
Inferred from Sequence Orthology
more info
 
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
membrane coat IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
coatomer subunit zeta-1
Names
nonclathrin coat protein zeta1-COP
zeta-1 COP
zeta-1-coat protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357748.1NP_001344677.1  coatomer subunit zeta-1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC164069
    Conserved Domains (1) summary
    pfam01217
    Location:12153
    Clat_adaptor_s; Clathrin adaptor complex small chain
  2. NM_019817.2NP_062791.1  coatomer subunit zeta-1 isoform 2

    See identical proteins and their annotated locations for NP_062791.1

    Status: VALIDATED

    Source sequence(s)
    AC164069
    Consensus CDS
    CCDS27901.1
    UniProtKB/Swiss-Prot
    P61924
    UniProtKB/TrEMBL
    Q542M2
    Related
    ENSMUSP00000097738.3, ENSMUST00000100162.4
    Conserved Domains (1) summary
    pfam01217
    Location:12153
    Clat_adaptor_s; Clathrin adaptor complex small chain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

    Range
    103272834..103299869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006521211.2XP_006521274.1  coatomer subunit zeta-1 isoform X1

    Related
    ENSMUSP00000155674.1, ENSMUST00000230893.1
    Conserved Domains (1) summary
    pfam01217
    Location:12153
    Clat_adaptor_s; Clathrin adaptor complex small chain
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