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Actr10 ARP10 actin-related protein 10 [ Mus musculus (house mouse) ]

Gene ID: 56444, updated on 11-Apr-2024

Summary

Official Symbol
Actr10provided by MGI
Official Full Name
ARP10 actin-related protein 10provided by MGI
Primary source
MGI:MGI:1891654
See related
Ensembl:ENSMUSG00000021076 AllianceGenome:MGI:1891654
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Arp11; Actr11
Summary
Acts upstream of or within microtubule-based movement. Part of dynactin complex. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Orthologous to human ACTR10 (actin related protein 10). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 25.1), CNS E18 (RPKM 14.8) and 22 other tissues See more
Orthologs
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Genomic context

Location:
12 C2; 12 29.39 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (70984631..71011492)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (70937857..70964718)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene FERM domain containing 6 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:71954025-71954293 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:71974587-71974696 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:71981618-71981801 Neighboring gene STARR-seq mESC enhancer starr_32405 Neighboring gene STARR-seq mESC enhancer starr_32406 Neighboring gene predicted gene, 32664 Neighboring gene predicted gene, 46355 Neighboring gene STARR-positive B cell enhancer ABC_E8488 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:72069569-72069678 Neighboring gene STARR-positive B cell enhancer ABC_E1441 Neighboring gene STARR-positive B cell enhancer ABC_E7144 Neighboring gene STARR-positive B cell enhancer ABC_E1442 Neighboring gene nuclear encoded tRNA lysine 17 (anticodon CTT) Neighboring gene proteasome subunit alpha 3 Neighboring gene RIKEN cDNA 3110056K07 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within microtubule-based movement IDA
Inferred from Direct Assay
more info
PubMed 
involved_in retrograde axonal transport of mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in actin cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
part_of dynactin complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of dynactin complex IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
actin-related protein 10
Names
ARP10 actin-related protein 10 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019785.2NP_062759.2  actin-related protein 10

    See identical proteins and their annotated locations for NP_062759.2

    Status: VALIDATED

    Source sequence(s)
    AC132325, AK090043, AK161642
    Consensus CDS
    CCDS25960.1
    UniProtKB/Swiss-Prot
    Q3TT18, Q99LU1, Q9QZB7
    Related
    ENSMUSP00000021479.6, ENSMUST00000021479.6
    Conserved Domains (1) summary
    cl25542
    Location:13364
    Actin; Actin

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    70984631..71011492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)