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per1a period circadian clock 1a [ Danio rerio (zebrafish) ]

Gene ID: 563926, updated on 3-Oct-2019

Summary

Official Symbol
per1aprovided by ZNC
Official Full Name
period circadian clock 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-011220-1
See related
Ensembl:ENSDARG00000056885
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
per1; zC237L4.4; si:ch211-237l4.4

Genomic context

See per1a in Genome Data Viewer
Location:
chromosome: 10
Exon count:
20
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (22811619..22831513, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (22841806..22862051, complement)
103 previous assembly Zv9 (GCF_000002035.4) 10 NC_007121.5 (23010987..23031711, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene si:ch211-237l4.6 Neighboring gene procollagen C-endopeptidase enhancer a Neighboring gene vesicle-associated membrane protein 2 Neighboring gene transfer RNA leucine (anticodon AAG)

Genomic regions, transcripts, and products

Pathways from BioSystems

  • Herpes simplex infection, organism-specific biosystem (from KEGG)
    Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
  • Herpes simplex infection, conserved biosystem (from KEGG)
    Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
transcription corepressor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
circadian regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
entrainment of circadian clock by photoperiod IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
photoperiodism IEP
Inferred from Expression Pattern
more info
PubMed 
response to hydrogen peroxide IEP
Inferred from Expression Pattern
more info
PubMed 
response to light stimulus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
period 1
Names
period homolog 1
period homolog 1a

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030183.1NP_001025354.1  period 1

    Status: PROVISIONAL

    Source sequence(s)
    AL807389
    Related
    ENSDARP00000073915.5, ENSDART00000079459.5
    Conserved Domains (3) summary
    cd00130
    Location:334435
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:347431
    PAS_3; PAS fold
    pfam12114
    Location:10081190
    Period_C; Period protein 2/3C-terminal region

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    22811619..22831513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005172626.4XP_005172683.1  period 1 isoform X3

    Conserved Domains (3) summary
    cd00130
    Location:369470
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:382466
    PAS_3; PAS fold
    pfam12114
    Location:11601347
    Period_C; Period protein 2/3C-terminal region
  2. XM_021479187.1XP_021334862.1  period 1 isoform X4

    Conserved Domains (3) summary
    pfam08447
    Location:382466
    PAS_3; PAS fold
    pfam12114
    Location:11041288
    Period_C; Period protein 2/3C-terminal region
    cl26464
    Location:6831023
    Atrophin-1; Atrophin-1 family
  3. XM_005172627.4XP_005172684.1  period 1 isoform X2

    Conserved Domains (3) summary
    cd00130
    Location:369470
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:382466
    PAS_3; PAS fold
    pfam12114
    Location:11601347
    Period_C; Period protein 2/3C-terminal region
  4. XM_005172625.4XP_005172682.1  period 1 isoform X1

    UniProtKB/TrEMBL
    A0A0R4ICG0
    Related
    ENSDARP00000131343.1, ENSDART00000160115.3
    Conserved Domains (3) summary
    cd00130
    Location:369470
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:382466
    PAS_3; PAS fold
    pfam12114
    Location:11611348
    Period_C; Period protein 2/3C-terminal region
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