U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Tagln3 transgelin 3 [ Mus musculus (house mouse) ]

Gene ID: 56370, updated on 5-Apr-2024

Summary

Official Symbol
Tagln3provided by MGI
Official Full Name
transgelin 3provided by MGI
Primary source
MGI:MGI:1926784
See related
Ensembl:ENSMUSG00000022658 AllianceGenome:MGI:1926784
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Np25; 2700038H05Rik; 2900005O10Rik
Summary
Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in central nervous system; gut; peripheral nervous system; and retina. Orthologous to human TAGLN3 (transgelin 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cerebellum adult (RPKM 204.8), CNS E14 (RPKM 149.6) and 5 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Tagln3 in Genome Data Viewer
Location:
16 B5; 16 29.99 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (45531591..45545271, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (45711230..45724531, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene cDNA sequence, BC016579 Neighboring gene STARR-seq mESC enhancer starr_40918 Neighboring gene transmembrane serine protease 7 Neighboring gene STARR-seq mESC enhancer starr_40919 Neighboring gene STARR-seq mESC enhancer starr_40920 Neighboring gene STARR-seq mESC enhancer starr_40921 Neighboring gene abhydrolase domain containing 10 Neighboring gene pleckstrin homology like domain, family B, member 2 Neighboring gene STARR-seq mESC enhancer starr_40922 Neighboring gene predicted gene 15638

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
transgelin-3
Names
neuronal protein Np25

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019754.3NP_062728.1  transgelin-3

    See identical proteins and their annotated locations for NP_062728.1

    Status: PROVISIONAL

    Source sequence(s)
    BC055338
    Consensus CDS
    CCDS28200.1
    UniProtKB/Swiss-Prot
    Q9R1Q8
    Related
    ENSMUSP00000093762.5, ENSMUST00000096057.5
    Conserved Domains (2) summary
    pfam00402
    Location:174198
    Calponin; Calponin family repeat
    cd21281
    Location:23141
    CH_TAGLN3; calponin homology (CH) domain found in transgelin-3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    45531591..45545271 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004939202.1 RNA Sequence