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Tmed2 transmembrane p24 trafficking protein 2 [ Mus musculus (house mouse) ]

Gene ID: 56334, updated on 12-Aug-2019

Summary

Official Symbol
Tmed2provided by MGI
Official Full Name
transmembrane p24 trafficking protein 2provided by MGI
Primary source
MGI:MGI:1929269
See related
Ensembl:ENSMUSG00000029390
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rnp24; Sid394; p24beta1; 1110032D12Rik; 1810020N21Rik
Expression
Ubiquitous expression in placenta adult (RPKM 136.3), ovary adult (RPKM 134.4) and 28 other tissues See more
Orthologs

Genomic context

See Tmed2 in Genome Data Viewer
Location:
5; 5 F
Exon count:
4
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (124540791..124550503)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (124990800..125000512)

Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115490139 Neighboring gene small nuclear ribonucleoprotein 35 (U11/U12) Neighboring gene Rab interacting lysosomal protein-like 1 Neighboring gene ribosomal protein L32 5C pseudogene Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 Neighboring gene eukaryotic translation initiation factor 2B, subunit 1 (alpha)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Chemically induced (ENU) (1)  1 citation

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC102446

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
ER to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
embryonic morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic placenta development IMP
Inferred from Mutant Phenotype
more info
PubMed 
heart looping IMP
Inferred from Mutant Phenotype
more info
PubMed 
in utero embryonic development IMP
Inferred from Mutant Phenotype
more info
PubMed 
intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
labyrinthine layer blood vessel development IMP
Inferred from Mutant Phenotype
more info
PubMed 
maternal placenta development IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism growth IMP
Inferred from Mutant Phenotype
more info
PubMed 
neural tube closure IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
post-anal tail morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
somite rostral/caudal axis specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
somitogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
COPI-coated vesicle ISO
Inferred from Sequence Orthology
more info
 
COPII-coated ER to Golgi transport vesicle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
endoplasmic reticulum-Golgi intermediate compartment IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
endoplasmic reticulum-Golgi intermediate compartment ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane ISO
Inferred from Sequence Orthology
more info
 
intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
zymogen granule membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
transmembrane emp24 domain-containing protein 2
Names
COPI-coated vesicle membrane protein p24
Sid394p
coated vesicle membrane protein
membrane protein p24A
p24 family protein beta-1
sid 394
transmembrane emp24 domain trafficking protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019770.2NP_062744.1  transmembrane emp24 domain-containing protein 2 precursor

    See identical proteins and their annotated locations for NP_062744.1

    Status: PROVISIONAL

    Source sequence(s)
    BC083140
    Consensus CDS
    CCDS19679.1
    UniProtKB/Swiss-Prot
    Q9R0Q3
    UniProtKB/TrEMBL
    A2RS53
    Related
    ENSMUSP00000054834.4, ENSMUST00000060226.10
    Conserved Domains (1) summary
    pfam01105
    Location:20196
    EMP24_GP25L; emp24/gp25L/p24 family/GOLD

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000071.6 Reference GRCm38.p6 C57BL/6J

    Range
    124540791..124550503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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