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ino80db INO80 complex subunit Db [ Danio rerio (zebrafish) ]

Gene ID: 563304, updated on 9-Sep-2025
Official Symbol
ino80dbprovided by ZNC
Official Full Name
INO80 complex subunit Dbprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070112-2072
See related
Ensembl:ENSDARG00000062226 AllianceGenome:ZFIN:ZDB-GENE-070112-2072
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:153949
Summary
Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be active in nucleus. Orthologous to human INO80D (INO80 complex subunit D). [provided by Alliance of Genome Resources, Apr 2025]
Orthologs
human mouse all
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See ino80db in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2025_04 current GRCz12tu (GCF_049306965.1) 6 NC_133181.1 (14200924..14224112)
RS_2024_08 previous assembly GRCz11 (GCF_000002035.6) 6 NC_007117.7 (13232934..13254851)

Chromosome 6 - NC_133181.1Genomic Context describing neighboring genes Neighboring gene acid-sensing (proton-gated) ion channel family member 4b Neighboring gene zinc finger, DBF-type containing 2 Neighboring gene eukaryotic translation elongation factor 1 beta 2 Neighboring gene NADH:ubiquinone oxidoreductase core subunit S1 Neighboring gene potassium inwardly rectifying channel subfamily J member 3b Neighboring gene ADP-ribosylation factor-like 6 interacting protein 6 Neighboring gene reprimo, TP53 dependent G2 arrest mediator candidate b

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Related articles in PubMed

  1. E2f5 is a versatile transcriptional activator required for spermatogenesis and multiciliated cell differentiation in zebrafish. Xie H, et al. PLoS Genet, 2020 Mar. PMID 32196499, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within DNA recombination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within DNA repair IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
Preferred Names
INO80 complex subunit D-B
Names
INO80 complex subunit D

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080588.1 → NP_001074057.1  INO80 complex subunit D-B

    See identical proteins and their annotated locations for NP_001074057.1

    Status: PROVISIONAL

    Source sequence(s)
    BC129037
    UniProtKB/Swiss-Prot
    A1L1F6
    Related
    ENSDARP00000084158.4, ENSDART00000089725.5
    Conserved Domains (1) summary
    pfam13891
    Location:18 → 79
    zf-C3Hc3H; Potential DNA-binding domain

RefSeqs of Annotated Genomes: GCF_049306965.1-RS_2025_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz12tu Primary Assembly

Genomic

  1. NC_133181.1 Reference GRCz12tu Primary Assembly

    Range
    14200924..14224112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_073953082.1 → XP_073809183.1  INO80 complex subunit D-B isoform X4

  2. XM_073953074.1 → XP_073809175.1  INO80 complex subunit D-B isoform X1

  3. XM_073953076.1 → XP_073809177.1  INO80 complex subunit D-B isoform X2

  4. XM_073953075.1 → XP_073809176.1  INO80 complex subunit D-B isoform X1

  5. XM_009302238.4 → XP_009300513.1  INO80 complex subunit D-B isoform X3

    See identical proteins and their annotated locations for XP_009300513.1

    UniProtKB/TrEMBL
    A0A8M3AT77
    Conserved Domains (1) summary
    pfam13891
    Location:18 → 79
    zf-C3Hc3H; Potential DNA-binding domain

  6. XM_073953080.1 → XP_073809181.1  INO80 complex subunit D-B isoform X4

  7. XM_073953083.1 → XP_073809184.1  INO80 complex subunit D-B isoform X5

  8. XM_009302237.4 → XP_009300512.1  INO80 complex subunit D-B isoform X3

    See identical proteins and their annotated locations for XP_009300512.1

    UniProtKB/TrEMBL
    A0A8M3AT77
    Conserved Domains (1) summary
    pfam13891
    Location:18 → 79
    zf-C3Hc3H; Potential DNA-binding domain

  9. XM_073953079.1 → XP_073809180.1  INO80 complex subunit D-B isoform X3

    UniProtKB/TrEMBL
    A0A8M3AT77

  10. XM_073953081.1 → XP_073809182.1  INO80 complex subunit D-B isoform X4

  11. XM_073953077.1 → XP_073809178.1  INO80 complex subunit D-B isoform X2

  12. XM_073953078.1 → XP_073809179.1  INO80 complex subunit D-B isoform X2

RNA

  1. XR_012407382.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1L1F6.1 GenPept UniProtKB/Swiss-Prot:A1L1F6

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