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mhc2d8.35b2 major histocompatibility complex class II d8.35b2 [ Danio rerio (zebrafish) ]

Gene ID: 563286, updated on 22-Jun-2021

Summary

Official Symbol
mhc2d8.35b2provided by ZNC
Official Full Name
major histocompatibility complex class II d8.35b2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030616-171
See related
Ensembl:ENSDARG00000104730
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:158775; si:dz160c18.3; si:dkey-33b17.3; si:busm1-160c18.3
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Genomic context

See mhc2d8.35b2 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (36142734..36146191)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (35211190..35214647)
103 previous assembly Zv9 (GCF_000002035.4) 8 NC_007119.5 (36142706..36146143)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 132C Neighboring gene major histocompatibility complex class II d8.35a1 Neighboring gene novel reverse transcriptase pseudogene Neighboring gene si:busm1-48c11.3

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Clone Names

  • MGC158775

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables MHC class II protein complex binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
part_of MHC class II protein complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein LOC563286
Names
MHC class II
beta chain

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080633.2NP_001074102.2  uncharacterized protein LOC563286

    Status: VALIDATED

    Source sequence(s)
    CT583723
    Related
    ENSDARP00000137499.2, ENSDART00000159361.2
    Conserved Domains (2) summary
    smart00921
    Location:45116
    MHC_II_beta; Class II histocompatibility antigen, beta domain
    cl11960
    Location:129222
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    36142734..36146191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009304129.2XP_009302404.1  uncharacterized protein LOC563286 isoform X1

    Conserved Domains (1) summary
    cl11960
    Location:38131
    Ig; Immunoglobulin domain
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