Format

Send to:

Choose Destination

Rbm14 RNA binding motif protein 14 [ Mus musculus (house mouse) ]

Gene ID: 56275, updated on 2-Oct-2021

Summary

Official Symbol
Rbm14provided by MGI
Official Full Name
RNA binding motif protein 14provided by MGI
Primary source
MGI:MGI:1929092
See related
Ensembl:ENSMUSG00000006456
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
p1; p16; PSP2; p16K; Sytip; 1300007E16Rik
Expression
Ubiquitous expression in thymus adult (RPKM 59.4), ovary adult (RPKM 56.8) and 28 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Rbm14 in Genome Data Viewer
Location:
19; 19 A
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (4850594..4861662, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (4800566..4811634, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (4800925..4811634, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene 21992 Neighboring gene proteasome (prosome, macropain) subunit, alpha type 3 pseudogene Neighboring gene RNA binding motif protein 4 Neighboring gene copper chaperone for superoxide dismutase Neighboring gene coiled-coil domain containing 87

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (1)  1 citation

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Readthrough Gm21992

Readthrough gene: Gm21992, Included gene: Rbm4

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables nuclear receptor coactivator activity ISO
Inferred from Sequence Orthology
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within SMAD protein signal transduction IDA
Inferred from Direct Assay
more info
PubMed 
involved_in centriole assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within immune system process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within innate immune response IEA
Inferred from Electronic Annotation
more info
 
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nuclear speck IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nuclear speck ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
part_of transcription regulator complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
RNA-binding protein 14
Names
synaptotagmin interacting protein

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019869.3NP_063922.2  RNA-binding protein 14

    See identical proteins and their annotated locations for NP_063922.2

    Status: VALIDATED

    Source sequence(s)
    AK050945, BE956494, BM938190
    Consensus CDS
    CCDS29437.1
    UniProtKB/Swiss-Prot
    Q8C2Q3
    Related
    ENSMUSP00000006625.8, ENSMUST00000006625.8
    Conserved Domains (3) summary
    TIGR01628
    Location:3280
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12608
    Location:171
    RRM1_CoAA; RNA recognition motif 1 in vertebrate RRM-containing coactivator activator/modulator (CoAA)
    cd12609
    Location:79146
    RRM2_CoAA; RNA recognition motif 2 in vertebrate RRM-containing coactivator activator/modulator (CoAA)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    4850594..4861662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center