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rlf rearranged L-myc fusion [ Danio rerio (zebrafish) ]

Gene ID: 562452, updated on 1-Aug-2018

Summary

Official Symbol
rlfprovided by ZNC
Official Full Name
rearranged L-myc fusionprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050208-257
See related
Ensembl:ENSDARG00000063553 Vega:OTTDARG00000024813
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
im:7146976; si:ch211-154e15.8
Orthologs

Genomic context

See rlf in Genome Data Viewer
Location:
chromosome: 17
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (24590142..24602503)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (24571759..24584099)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family H, member 1 Neighboring gene aftiphilin b Neighboring gene zinc metallopeptidase, STE24 homolog Neighboring gene ATP synthase inhibitory factor subunit 1b

Genomic regions, transcripts, and products

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    24590142..24602503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021467415.1XP_021323090.1  zinc finger protein Rlf

    Related
    ENSDARP00000087373.3, ENSDART00000092941.5
    Conserved Domains (4) summary
    COG5189
    Location:11701267
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:742762
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl25751
    Location:17101937
    DUF4045; Domain of unknown function (DUF4045)
    cl27702
    Location:9481120
    COG3942; Surface antigen [Cell wall/membrane/envelope biogenesis]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394990.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    150874..164292
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_685832.9XP_690924.7  zinc finger protein Rlf

    Conserved Domains (4) summary
    COG5189
    Location:11701267
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:742762
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl25751
    Location:17101937
    DUF4045; Domain of unknown function (DUF4045)
    cl27702
    Location:9481120
    COG3942; Surface antigen [Cell wall/membrane/envelope biogenesis]
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