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C21orf62 chromosome 21 open reading frame 62 [ Homo sapiens (human) ]

Gene ID: 56245, updated on 21-Dec-2019

Summary

Official Symbol
C21orf62provided by HGNC
Official Full Name
chromosome 21 open reading frame 62provided by HGNC
Primary source
HGNC:HGNC:1305
See related
Ensembl:ENSG00000205929
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
B37; PRED81; C21orf120
Expression
Biased expression in ovary (RPKM 6.0), kidney (RPKM 3.0) and 3 other tissues See more
Orthologs

Genomic context

See C21orf62 in Genome Data Viewer
Location:
21q22.11
Exon count:
4
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 21 NC_000021.9 (32790673..32813808, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (34162984..34186053, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene synaptojanin 1 Neighboring gene PAXBP1 antisense RNA 1 Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene C21orf62 antisense RNA 1 Neighboring gene VISTA enhancer hs1548 Neighboring gene uncharacterized LOC105377136 Neighboring gene VISTA enhancer hs1188

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C21orf62

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162495.3NP_001155967.2  uncharacterized protein C21orf62 precursor

    See identical proteins and their annotated locations for NP_001155967.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2 and 3 encode the same protein.
    Source sequence(s)
    AP000280, BC069689, BC069779, BE466137, DQ656042
    Consensus CDS
    CCDS42919.2
    UniProtKB/Swiss-Prot
    Q9NYP8
    Related
    ENSP00000418653.1, ENST00000479548.2
    Conserved Domains (1) summary
    pfam15137
    Location:6219
    DUF4571; Domain of unknown function (DUF4571)
  2. NM_001162496.3NP_001155968.2  uncharacterized protein C21orf62 precursor

    See identical proteins and their annotated locations for NP_001155968.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
    Source sequence(s)
    AP000280, BC069689, BC069709, BE466137, DQ656042
    Consensus CDS
    CCDS42919.2
    UniProtKB/Swiss-Prot
    Q9NYP8
    Related
    ENSP00000418511.1, ENST00000487113.1
    Conserved Domains (1) summary
    pfam15137
    Location:6219
    DUF4571; Domain of unknown function (DUF4571)
  3. NM_019596.6NP_062542.5  uncharacterized protein C21orf62 precursor

    See identical proteins and their annotated locations for NP_062542.5

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
    Source sequence(s)
    AP000280, BC069689, BE466137, DQ656042
    Consensus CDS
    CCDS42919.2
    UniProtKB/Swiss-Prot
    Q9NYP8
    Related
    ENSP00000418830.1, ENST00000490358.5
    Conserved Domains (1) summary
    pfam15137
    Location:6219
    DUF4571; Domain of unknown function (DUF4571)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    32790673..32813808 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011529653.2XP_011527955.1  uncharacterized protein C21orf62 isoform X1

    See identical proteins and their annotated locations for XP_011527955.1

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NW_003315969.2 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    21595..44610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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