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sdhb succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [ Danio rerio (zebrafish) ]

Gene ID: 562149, updated on 5-Sep-2021

Summary

Official Symbol
sdhbprovided by ZNC
Official Full Name
succinate dehydrogenase complex, subunit B, iron sulfur (Ip)provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8005
See related
Ensembl:ENSDARG00000075768
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
Ip; fj46d06; wu:fj46d06
Orthologs
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Genomic context

See sdhb in Genome Data Viewer
Location:
chromosome: 22
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (11383..16123)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (62681..67421)
103 previous assembly Zv9 (GCF_000002035.4) 22 NC_007133.5 (53663..58403)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene ATPase family AAA domain containing 3 Neighboring gene mitochondrial ribosomal protein L20 Neighboring gene microfibril associated protein 2 Neighboring gene transmembrane protein 88B

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General gene information

Markers

Homology

Clone Names

  • MGC165456

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables 2 iron, 2 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables 2 iron, 2 sulfur cluster binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables 3 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables 3 iron, 4 sulfur cluster binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables 4 iron, 4 sulfur cluster binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables electron transfer activity IEA
Inferred from Electronic Annotation
more info
 
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
enables succinate dehydrogenase (ubiquinone) activity IEA
Inferred from Electronic Annotation
more info
 
enables ubiquinone binding ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
involved_in aerobic respiration IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in respiratory electron transport chain IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 
located_in mitochondrial inner membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
is_active_in mitochondrial membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial
Names
Iron-sulfur subunit of complex II
NP_001092210.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098740.1NP_001092210.1  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial precursor

    See identical proteins and their annotated locations for NP_001092210.1

    Status: PROVISIONAL

    Source sequence(s)
    BC142799
    UniProtKB/Swiss-Prot
    A5PL98
    Related
    ENSDARP00000062263.5, ENSDART00000062264.8
    Conserved Domains (3) summary
    PRK05950
    Location:40271
    sdhB; succinate dehydrogenase iron-sulfur subunit; Reviewed
    pfam13085
    Location:40146
    Fer2_3; 2Fe-2S iron-sulfur cluster binding domain
    pfam13534
    Location:184257
    Fer4_17; 4Fe-4S dicluster domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    11383..16123
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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