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Scamp4 secretory carrier membrane protein 4 [ Mus musculus (house mouse) ]

Gene ID: 56214, updated on 9-Dec-2024

Summary

Official Symbol
Scamp4provided by MGI
Official Full Name
secretory carrier membrane protein 4provided by MGI
Primary source
MGI:MGI:1928947
See related
Ensembl:ENSMUSG00000113949 AllianceGenome:MGI:1928947
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sc4; 2410022D05Rik
Summary
Predicted to be involved in protein transport. Predicted to be located in membrane. Predicted to be active in recycling endosome membrane and trans-Golgi network membrane. Is expressed in orbito-sphenoid. Orthologous to human SCAMP4 (secretory carrier membrane protein 4). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Ubiquitous expression in duodenum adult (RPKM 72.7), adrenal adult (RPKM 70.0) and 28 other tissues See more
Orthologs
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Genomic context

See Scamp4 in Genome Data Viewer
Location:
10 C1; 10 39.72 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (80438716..80451617)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (80602882..80615783)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E11446 Neighboring gene predicted gene, 26710 Neighboring gene abhydrolase domain containing 17A Neighboring gene STARR-positive B cell enhancer ABC_E2950 Neighboring gene STARR-positive B cell enhancer ABC_E6883 Neighboring gene adenosine deaminase, tRNA-specific 3 Neighboring gene microRNA 6912 Neighboring gene predicted gene, 31298 Neighboring gene casein kinase 1, gamma 2 Neighboring gene predicted gene, 51810 Neighboring gene BTB domain containing 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Gene trapped (1) 

General gene information

Markers

Potential readthrough

Included gene: Adat3

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in protein transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in recycling endosome membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in trans-Golgi network membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
secretory carrier-associated membrane protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019575.4NP_062521.1  secretory carrier-associated membrane protein 4

    See identical proteins and their annotated locations for NP_062521.1

    Status: VALIDATED

    Source sequence(s)
    AF224721, AK019112
    Consensus CDS
    CCDS24028.1
    UniProtKB/Swiss-Prot
    Q9JKV5
    UniProtKB/TrEMBL
    Q3TGX0, Q3U4R0
    Related
    ENSMUSP00000078808.5, ENSMUST00000079883.12
    Conserved Domains (1) summary
    pfam04144
    Location:20178
    SCAMP; SCAMP family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    80438716..80451617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)