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ltbp1 latent transforming growth factor beta binding protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 562072, updated on 14-Feb-2019

Summary

Official Symbol
ltbp1provided by ZNC
Official Full Name
latent transforming growth factor beta binding protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-091202-8
See related
Ensembl:ENSDARG00000056922
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Orthologs

Genomic context

See ltbp1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
30
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (22956448..23117535)
103 previous assembly Zv9 (GCF_000002035.4) 17 NC_007128.5 (22929154..22947360)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene baculoviral IAP repeat containing 6 Neighboring gene birc6 antisense RNA 2 Neighboring gene tetratricopeptide repeat domain 27 Neighboring gene microRNA 456 Neighboring gene RAS guanyl releasing protein 3 (calcium and DAG-regulated) Neighboring gene family with sequence similarity 98 member A

Genomic regions, transcripts, and products

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
calcium ion binding IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
latent transforming growth factor beta binding protein 1; latent-transforming growth factor beta-binding protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    22956448..23117535
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017351811.2XP_017207300.1  latent-transforming growth factor beta-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    F1QQ56
    Related
    ENSDARP00000073916.6, ENSDART00000079460.6
  2. XM_017351812.2XP_017207301.1  latent-transforming growth factor beta-binding protein 1 isoform X2

    Related
    ENSDARP00000127651.1, ENSDART00000155145.3
  3. XM_017351813.2XP_017207302.1  latent-transforming growth factor beta-binding protein 1 isoform X3

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394988.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    15925..144934
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473139.1XP_021328814.1  latent-transforming growth factor beta-binding protein 1 isoform X4

    Conserved Domains (6) summary
    smart00179
    Location:421451
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:703738
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00683
    Location:484523
    TB; TB domain
    pfam12662
    Location:641664
    cEGF; Complement Clr-like EGF-like
    cl21504
    Location:661701
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl25887
    Location:25161
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
  2. XM_021473140.1XP_021328815.1  latent-transforming growth factor beta-binding protein 1 isoform X5

    Conserved Domains (6) summary
    smart00179
    Location:421451
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:703738
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00683
    Location:484523
    TB; TB domain
    pfam12662
    Location:641664
    cEGF; Complement Clr-like EGF-like
    cl21504
    Location:661701
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl25887
    Location:25161
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
  3. XM_021473141.1XP_021328816.1  latent-transforming growth factor beta-binding protein 1 isoform X6

    Conserved Domains (6) summary
    smart00179
    Location:421451
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:647682
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00683
    Location:9601001
    TB; TB domain
    pfam12662
    Location:585608
    cEGF; Complement Clr-like EGF-like
    cl21504
    Location:605645
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl25887
    Location:25161
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395329.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    94997..239997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474363.1XP_021330038.1  latent-transforming growth factor beta-binding protein 1 isoform X7

    Conserved Domains (6) summary
    smart00179
    Location:563593
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:845880
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00683
    Location:626665
    TB; TB domain
    pfam07645
    Location:803843
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:783806
    cEGF; Complement Clr-like EGF-like
    cl25887
    Location:167303
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
  2. XM_021474364.1XP_021330039.1  latent-transforming growth factor beta-binding protein 1 isoform X8

    Conserved Domains (6) summary
    smart00179
    Location:563593
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:789824
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00683
    Location:11021143
    TB; TB domain
    pfam07645
    Location:747787
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:727750
    cEGF; Complement Clr-like EGF-like
    cl25887
    Location:167303
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
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