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TDRD1 tudor domain containing 1 [ Homo sapiens (human) ]

Gene ID: 56165, updated on 22-Sep-2022

Summary

Official Symbol
TDRD1provided by HGNC
Official Full Name
tudor domain containing 1provided by HGNC
Primary source
HGNC:HGNC:11712
See related
Ensembl:ENSG00000095627 MIM:605796; AllianceGenome:HGNC:11712
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CT41.1
Summary
This gene encodes a protein containing a tudor domain that is thought to function in the suppression of transposable elements during spermatogenesis. The related protein in mouse forms a complex with piRNAs and Piwi proteins to promote methylation and silencing of target sequences. This gene was observed to be upregulated by ETS transcription factor ERG in prostate tumors. [provided by RefSeq, Sep 2018]
Expression
Biased expression in testis (RPKM 8.5) and prostate (RPKM 0.6) See more
Orthologs
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Genomic context

See TDRD1 in Genome Data Viewer
Location:
10q25.3
Exon count:
30
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (114174874..114232666)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (115072911..115126291)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (115939046..115992425)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene UBE2V1 pseudogene 5 Neighboring gene coiled-coil domain containing 186 Neighboring gene microRNA 2110 Neighboring gene aurora kinase A pseudogene 2 Neighboring gene von Willebrand factor A domain containing 2 Neighboring gene actin filament associated protein 1 like 2 Neighboring gene uncharacterized LOC105378494

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ21082

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in DNA methylation involved in gamete generation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in P granule organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in RNA-mediated gene silencing ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in germ cell development ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
 
involved_in piRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in piRNA processing ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in spermatogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
is_active_in P granule IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in P granule ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in pi-body ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
tudor domain-containing protein 1
Names
cancer/testis antigen 41.1
testicular tissue protein Li 193

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001365891.2NP_001352820.1  tudor domain-containing protein 1 isoform 2

    Status: REVIEWED

    Source sequence(s)
    AC022023, BX648664
    Conserved Domains (2) summary
    pfam00567
    Location:712832
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
  2. NM_001385363.1NP_001372292.1  tudor domain-containing protein 1 isoform 1

    Status: REVIEWED

    Source sequence(s)
    AC022023
    UniProtKB/TrEMBL
    A0A140VJW6
    Conserved Domains (5) summary
    pfam00567
    Location:715832
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
    cd20408
    Location:268396
    Tudor_TDRD1_rpt1; first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20409
    Location:517598
    Tudor_TDRD1_rpt2; second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20411
    Location:9441059
    Tudor_TDRD1_rpt4; fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
  3. NM_001385364.2NP_001372293.1  tudor domain-containing protein 1 isoform 3

    Status: REVIEWED

    Source sequence(s)
    AC022023
    UniProtKB/Swiss-Prot
    Q9H7B3
    Conserved Domains (5) summary
    pfam00567
    Location:715832
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
    cd20408
    Location:268396
    Tudor_TDRD1_rpt1; first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20409
    Location:517598
    Tudor_TDRD1_rpt2; second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20411
    Location:9441059
    Tudor_TDRD1_rpt4; fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
  4. NM_001385365.1NP_001372294.1  tudor domain-containing protein 1 isoform 4

    Status: REVIEWED

    Source sequence(s)
    AC022023
    Conserved Domains (5) summary
    pfam00567
    Location:715832
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
    cd20408
    Location:268396
    Tudor_TDRD1_rpt1; first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20409
    Location:517598
    Tudor_TDRD1_rpt2; second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20411
    Location:9441059
    Tudor_TDRD1_rpt4; fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
  5. NM_001385366.1NP_001372295.1  tudor domain-containing protein 1 isoform 5

    Status: REVIEWED

    Source sequence(s)
    AC022023
    Conserved Domains (5) summary
    pfam00567
    Location:658775
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
    cd20408
    Location:268396
    Tudor_TDRD1_rpt1; first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20411
    Location:8871002
    Tudor_TDRD1_rpt4; fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cl02573
    Location:517553
    Tudor_SF; Tudor domain superfamily
  6. NM_001385367.1NP_001372296.1  tudor domain-containing protein 1 isoform 6

    Status: REVIEWED

    Source sequence(s)
    AC022023
    UniProtKB/TrEMBL
    H9KV63
    Related
    ENSP00000358288.1, ENST00000369282.5
    Conserved Domains (5) summary
    pfam00567
    Location:715832
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
    cd20408
    Location:268396
    Tudor_TDRD1_rpt1; first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20409
    Location:517598
    Tudor_TDRD1_rpt2; second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20411
    Location:9441058
    Tudor_TDRD1_rpt4; fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
  7. NM_001385368.1NP_001372297.1  tudor domain-containing protein 1 isoform 7

    Status: REVIEWED

    Source sequence(s)
    AC022023
    UniProtKB/TrEMBL
    H9KV62
    Related
    ENSP00000358286.1, ENST00000369280.1
    Conserved Domains (5) summary
    pfam00567
    Location:715832
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
    cd20408
    Location:268396
    Tudor_TDRD1_rpt1; first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20409
    Location:517598
    Tudor_TDRD1_rpt2; second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20411
    Location:9441058
    Tudor_TDRD1_rpt4; fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
  8. NM_001385369.1NP_001372298.1  tudor domain-containing protein 1 isoform 7

    Status: REVIEWED

    Source sequence(s)
    AC022023
    UniProtKB/TrEMBL
    H9KV62
    Conserved Domains (5) summary
    pfam00567
    Location:715832
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
    cd20408
    Location:268396
    Tudor_TDRD1_rpt1; first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20409
    Location:517598
    Tudor_TDRD1_rpt2; second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20411
    Location:9441058
    Tudor_TDRD1_rpt4; fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
  9. NM_001385370.1NP_001372299.1  tudor domain-containing protein 1 isoform 8

    Status: REVIEWED

    Source sequence(s)
    AC022023
    Conserved Domains (5) summary
    pfam00567
    Location:658726
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
    cd20408
    Location:268396
    Tudor_TDRD1_rpt1; first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20411
    Location:830945
    Tudor_TDRD1_rpt4; fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cl02573
    Location:517553
    Tudor_SF; Tudor domain superfamily
  10. NM_001385371.1NP_001372300.1  tudor domain-containing protein 1 isoform 9

    Status: REVIEWED

    Source sequence(s)
    AC022023
    Conserved Domains (5) summary
    pfam00567
    Location:667784
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
    cd20409
    Location:469550
    Tudor_TDRD1_rpt2; second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20411
    Location:8961010
    Tudor_TDRD1_rpt4; fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cl02573
    Location:268348
    Tudor_SF; Tudor domain superfamily
  11. NM_001385372.1NP_001372301.1  tudor domain-containing protein 1 isoform 10

    Status: REVIEWED

    Source sequence(s)
    AC022023
    Conserved Domains (5) summary
    pfam00567
    Location:715832
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
    cd20408
    Location:268396
    Tudor_TDRD1_rpt1; first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20409
    Location:517598
    Tudor_TDRD1_rpt2; second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20411
    Location:9441058
    Tudor_TDRD1_rpt4; fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
  12. NM_001395205.1NP_001382134.1  tudor domain-containing protein 1 isoform 3

    Status: REVIEWED

    Source sequence(s)
    AC022023
    UniProtKB/Swiss-Prot
    Q9H7B3
    Related
    ENSP00000511878.1, ENST00000695399.1
    Conserved Domains (5) summary
    pfam00567
    Location:715832
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
    cd20408
    Location:268396
    Tudor_TDRD1_rpt1; first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20409
    Location:517598
    Tudor_TDRD1_rpt2; second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20411
    Location:9441059
    Tudor_TDRD1_rpt4; fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
  13. NM_198795.2NP_942090.1  tudor domain-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_942090.1

    Status: REVIEWED

    Source sequence(s)
    AC022023, AK122916, BC035010, BQ882979, BX648664, CB136029
    Consensus CDS
    CCDS7588.1
    UniProtKB/Swiss-Prot
    Q9BXT4
    UniProtKB/TrEMBL
    A0A140VJW6
    Related
    ENSP00000251864.2, ENST00000251864.7
    Conserved Domains (5) summary
    pfam00567
    Location:715832
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
    cd20408
    Location:268396
    Tudor_TDRD1_rpt1; first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20409
    Location:517598
    Tudor_TDRD1_rpt2; second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20411
    Location:9441059
    Tudor_TDRD1_rpt4; fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    114174874..114232666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011539962.2XP_011538264.1  tudor domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011538264.1

    UniProtKB/Swiss-Prot
    Q9BXT4
    UniProtKB/TrEMBL
    A0A140VJW6
    Conserved Domains (5) summary
    pfam00567
    Location:715832
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
    cd20408
    Location:268396
    Tudor_TDRD1_rpt1; first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20409
    Location:517598
    Tudor_TDRD1_rpt2; second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20411
    Location:9441059
    Tudor_TDRD1_rpt4; fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
  2. XM_011539964.3XP_011538266.1  tudor domain-containing protein 1 isoform X3

    Conserved Domains (3) summary
    cd04508
    Location:709756
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    pfam00567
    Location:655775
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
  3. XM_047425489.1XP_047281445.1  tudor domain-containing protein 1 isoform X6

  4. XM_017016414.3XP_016871903.1  tudor domain-containing protein 1 isoform X2

  5. XM_047425488.1XP_047281444.1  tudor domain-containing protein 1 isoform X5

  6. XM_047425487.1XP_047281443.1  tudor domain-containing protein 1 isoform X4

  7. XM_047425491.1XP_047281447.1  tudor domain-containing protein 1 isoform X7

  8. XM_047425486.1XP_047281442.1  tudor domain-containing protein 1 isoform X3

  9. XM_047425490.1XP_047281446.1  tudor domain-containing protein 1 isoform X6

  10. XM_047425492.1XP_047281448.1  tudor domain-containing protein 1 isoform X7

  11. XM_011539959.3XP_011538261.1  tudor domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011538261.1

    UniProtKB/Swiss-Prot
    Q9BXT4
    UniProtKB/TrEMBL
    A0A140VJW6
    Conserved Domains (5) summary
    pfam00567
    Location:715832
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
    cd20408
    Location:268396
    Tudor_TDRD1_rpt1; first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20409
    Location:517598
    Tudor_TDRD1_rpt2; second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20411
    Location:9441059
    Tudor_TDRD1_rpt4; fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
  12. XM_011539960.3XP_011538262.1  tudor domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011538262.1

    UniProtKB/Swiss-Prot
    Q9BXT4
    UniProtKB/TrEMBL
    A0A140VJW6
    Conserved Domains (5) summary
    pfam00567
    Location:715832
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
    cd20408
    Location:268396
    Tudor_TDRD1_rpt1; first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20409
    Location:517598
    Tudor_TDRD1_rpt2; second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20411
    Location:9441059
    Tudor_TDRD1_rpt4; fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
  13. XM_011539961.3XP_011538263.1  tudor domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011538263.1

    UniProtKB/Swiss-Prot
    Q9BXT4
    UniProtKB/TrEMBL
    A0A140VJW6
    Conserved Domains (5) summary
    pfam00567
    Location:715832
    TUDOR; Tudor domain
    pfam01753
    Location:170206
    zf-MYND; MYND finger
    cd20408
    Location:268396
    Tudor_TDRD1_rpt1; first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20409
    Location:517598
    Tudor_TDRD1_rpt2; second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins
    cd20411
    Location:9441059
    Tudor_TDRD1_rpt4; fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    115072911..115126291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_031278.1: Suppressed sequence

    Description
    NM_031278.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.