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TEX13A testis expressed 13A [ Homo sapiens (human) ]

Gene ID: 56157, updated on 17-Sep-2022

Summary

Official Symbol
TEX13Aprovided by HGNC
Official Full Name
testis expressed 13Aprovided by HGNC
Primary source
HGNC:HGNC:11735
See related
Ensembl:ENSG00000268629 MIM:300312; AllianceGenome:HGNC:11735
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This gene is similar to a mouse gene that is expressed in the testis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2014]
Expression
Restricted expression toward testis (RPKM 3.2) See more
Orthologs
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Genomic context

See TEX13A in Genome Data Viewer
Location:
Xq22.3
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (105218929..105220694, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (103650189..103651954, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (104463611..104465378, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor accessory protein like 2 Neighboring gene PHB1 pseudogene 10 Neighboring gene ribosomal protein L18a pseudogene 14 Neighboring gene potassium channel tetramerization domain containing 9 pseudogene 2 Neighboring gene uncharacterized LOC107985680

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC131984

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
testis-expressed protein 13A
Names
testis-expressed sequence 13A protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_016253.1 RefSeqGene

    Range
    4981..6746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001291277.2NP_001278206.1  testis-expressed protein 13A

    See identical proteins and their annotated locations for NP_001278206.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    Z74477
    Consensus CDS
    CCDS76005.1
    UniProtKB/Swiss-Prot
    Q32NB6, Q9BXU3
    Related
    ENSP00000477478.2, ENST00000609007.3
    Conserved Domains (3) summary
    sd00025
    Location:380399
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:376400
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam15186
    Location:5144
    TEX13; Testis-expressed sequence 13 protein family
  2. NM_031274.5NP_112564.1  testis-expressed protein 13A

    See identical proteins and their annotated locations for NP_112564.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    Z74477
    Consensus CDS
    CCDS76005.1
    UniProtKB/Swiss-Prot
    Q32NB6, Q9BXU3
    Related
    ENSP00000471604.2, ENST00000600991.6
    Conserved Domains (3) summary
    sd00025
    Location:380399
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:376400
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam15186
    Location:5144
    TEX13; Testis-expressed sequence 13 protein family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    105218929..105220694 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    103650189..103651954 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)