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yap1 Yes1 associated transcriptional regulator [ Danio rerio (zebrafish) ]

Gene ID: 561411, updated on 12-Jan-2020

Summary

Official Symbol
yap1provided by ZNC
Official Full Name
Yes1 associated transcriptional regulatorprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-9710
See related
Ensembl:ENSDARG00000068401
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
zYAP; YAP65; cb194; sb:cb194; wu:fc18c04; zgc:158380; si:dkey-3b8.3; si:ch211-181p1.5
Orthologs

Genomic context

See yap1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (37283765..37355680, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (37302757..37374684, complement)
103 previous assembly Zv9 (GCF_000002035.4) 18 NC_007129.5 (35623601..35695528, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene tubulin folding cofactor B Neighboring gene transmembrane protein 123 Neighboring gene centrosomal protein 126 Neighboring gene uncharacterized LOC103909173

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Markers

Homology

Clone Names

  • MGC158380

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
BMP signaling pathway IGI
Inferred from Genetic Interaction
more info
PubMed 
BMP signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
blood vessel morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
brain development IMP
Inferred from Mutant Phenotype
more info
PubMed 
cartilage development IMP
Inferred from Mutant Phenotype
more info
PubMed 
cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
dorsal/ventral axis specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic digestive tract development IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic hemopoiesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
endoderm development IMP
Inferred from Mutant Phenotype
more info
PubMed 
fin regeneration IMP
Inferred from Mutant Phenotype
more info
PubMed 
heart formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
hippo signaling TAS
Traceable Author Statement
more info
PubMed 
negative regulation of apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
pancreas development IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of glutamate-ammonia ligase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
posterior lateral line development IMP
Inferred from Mutant Phenotype
more info
PubMed 
pronephric duct development IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of organ growth IMP
Inferred from Mutant Phenotype
more info
PubMed 
retinal pigment epithelium development IGI
Inferred from Genetic Interaction
more info
PubMed 
retinal pigment epithelium development IMP
Inferred from Mutant Phenotype
more info
PubMed 
secondary heart field specification IGI
Inferred from Genetic Interaction
more info
PubMed 
secondary heart field specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
vasculature development IGI
Inferred from Genetic Interaction
more info
PubMed 
vasculature development IMP
Inferred from Mutant Phenotype
more info
PubMed 
vasculogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
vasculogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
chromatin IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
transcriptional coactivator YAP1
Names
Yes-associated protein 1
protein yorkie homolog
yap
yes-associated protein YAP65 homolog
yorkie homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001139480.1NP_001132952.1  transcriptional coactivator YAP1

    See identical proteins and their annotated locations for NP_001132952.1

    Status: PROVISIONAL

    Source sequence(s)
    AL954841
    UniProtKB/Swiss-Prot
    Q1L8J7
    Related
    ENSDARP00000089684.4, ENSDART00000098914.5
    Conserved Domains (3) summary
    smart00456
    Location:127158
    WW; Domain with 2 conserved Trp (W) residues
    pfam00397
    Location:188217
    WW; WW domain
    pfam15238
    Location:41186
    FAM181; FAM181

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    37283765..37355680 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005173662.4XP_005173719.1  transcriptional coactivator YAP1 isoform X1

    Conserved Domains (2) summary
    smart00456
    Location:127158
    WW; Domain with 2 conserved Trp (W) residues
    pfam15238
    Location:41197
    FAM181; FAM181

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395040.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    32370..104694 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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