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elp1 elongator complex protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 561039, updated on 2-Oct-2018

Summary

Official Symbol
elp1provided by ZNC
Official Full Name
elongator complex protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-071116-7
See related
Ensembl:ENSDARG00000094204 Vega:OTTDARG00000041926
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
ikbkap; ikbkapl
Orthologs

Genomic context

See elp1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
37
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (6245942..6287006, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (5939108..5980143, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene si:ch73-22a13.3 Neighboring gene highly divergent homeobox Neighboring gene SMU1, DNA replication regulator and spliceosomal factor a Neighboring gene TBC1 domain family, member 2 Neighboring gene solute carrier family 44 (choline transporter), member 1b

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
enteric nervous system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Elongator holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
elongator complex protein 1
Names
IKAP
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein like

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    6245942..6287006 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_684442.8XP_689534.5  elongator complex protein 1

    UniProtKB/TrEMBL
    A0A0R4IJ07
    Related
    ENSDARP00000135682.1, OTTDARP00000046707, ENSDART00000168174.2
    Conserved Domains (3) summary
    COG5290
    Location:711255
    COG5290; IkappaB kinase complex, IKAP component [Transcription]
    sd00008
    Location:962993
    TPR_YbbN; TPR repeat [structural motif]
    pfam04762
    Location:1934
    IKI3; IKI3 family
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