Format

Send to:

Choose Destination

daxx death-domain associated protein [ Danio rerio (zebrafish) ]

Gene ID: 561006, updated on 17-Nov-2020

Summary

Official Symbol
daxxprovided by ZNC
Official Full Name
death-domain associated proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-010110-3
See related
Ensembl:ENSDARG00000000729
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fd15c03; si:dz179b20.7
Orthologs

Genomic context

See daxx in Genome Data Viewer
Location:
chromosome: 19
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (7013053..7033667, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (7095790..7114740, complement)
103 previous assembly Zv9 (GCF_000002035.4) 19 NC_007130.5 (7636993..7656306, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene kinesin family member C1 Neighboring gene zinc finger and BTB domain containing 22b Neighboring gene TAP binding protein (tapasin), tandem duplicate 1 Neighboring gene major histocompatibility complex class I UKA

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
histone binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription corepressor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription corepressor activity IDA
Inferred from Direct Assay
more info
PubMed 
transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
apoptotic process IEA
Inferred from Electronic Annotation
more info
 
chromatin organization IEA
Inferred from Electronic Annotation
more info
 
negative regulation of transcription, DNA-templated IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of transcription, DNA-templated ISS
Inferred from Sequence or Structural Similarity
more info
 
nucleosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of apoptotic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
PML body IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
PML body ISS
Inferred from Sequence or Structural Similarity
more info
 
chromosome IEA
Inferred from Electronic Annotation
more info
 
chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleolus IEA
Inferred from Electronic Annotation
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
death domain-associated protein 6
Names
death-associated protein 6
fas-binding

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044949.1NP_001038414.1  death domain-associated protein 6

    See identical proteins and their annotated locations for NP_001038414.1

    Status: PROVISIONAL

    Source sequence(s)
    BX927188
    UniProtKB/TrEMBL
    Q1LUU4
    Related
    ENSDARP00000105452.1, ENSDART00000123443.3
    Conserved Domains (2) summary
    cd13150
    Location:195400
    DAXX_histone_binding; Histone binding domain of the death-domain associated protein (DAXX)
    pfam03344
    Location:53151
    Daxx; Daxx N-terminal Rassf1C-interacting domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    7013053..7033667 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017352251.2XP_017207740.1  death domain-associated protein 6 isoform X2

  2. XM_005159438.4XP_005159495.2  death domain-associated protein 6 isoform X1

    Conserved Domains (2) summary
    cd13150
    Location:242447
    DAXX_histone_binding; Histone binding domain of the death-domain associated protein (DAXX)
    pfam03344
    Location:100198
    Daxx; Daxx N-terminal Rassf1C-interacting domain
  3. XM_005159440.4XP_005159497.1  death domain-associated protein 6 isoform X3

    See identical proteins and their annotated locations for XP_005159497.1

    UniProtKB/TrEMBL
    Q1LUU4
    Conserved Domains (2) summary
    cd13150
    Location:195400
    DAXX_histone_binding; Histone binding domain of the death-domain associated protein (DAXX)
    pfam03344
    Location:53151
    Daxx; Daxx N-terminal Rassf1C-interacting domain
Support Center