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mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase [ Danio rerio (zebrafish) ]

Gene ID: 560667, updated on 26-Jun-2024

Summary

Official Symbol
mtrrprovided by ZNC
Official Full Name
5-methyltetrahydrofolate-homocysteine methyltransferase reductaseprovided by ZNC
Primary source
ZFIN:ZDB-GENE-101115-3
See related
Ensembl:ENSDARG00000045398 AllianceGenome:ZFIN:ZDB-GENE-101115-3
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable FMN binding activity; [methionine synthase] reductase activity; and flavin adenine dinucleotide binding activity. Predicted to be involved in homocysteine metabolic process and methionine biosynthetic process. Predicted to be active in cytosol. Used to study visceral heterotaxy. Human ortholog(s) of this gene implicated in several diseases, including endocrine gland cancer (multiple); heart disease (multiple); hematologic cancer (multiple); homocystinuria; and homocystinuria-megaloblastic anemia cblE type. Orthologous to human MTRR (5-methyltetrahydrofolate-homocysteine methyltransferase reductase). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See mtrr in Genome Data Viewer
Location:
chromosome: 24
Exon count:
15
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (16855750..16905018, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (16711331..16760599, complement)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110437797 Neighboring gene sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene chaperonin containing TCP1, subunit 5 (epsilon) Neighboring gene carboxymethylenebutenolidase homolog (Pseudomonas)

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables FMN binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables FMN binding IEA
Inferred from Electronic Annotation
more info
 
enables [methionine synthase] reductase (NADPH) activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables [methionine synthase] reductase (NADPH) activity IEA
Inferred from Electronic Annotation
more info
 
enables flavin adenine dinucleotide binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within amino acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
involved_in homocysteine metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in methionine biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within methionine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
methionine synthase reductase
XP_005162677.1
XP_005162678.1
XP_689157.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386530.1NP_001373459.1  methionine synthase reductase

    Status: VALIDATED

    Source sequence(s)
    BX004771, BX469922
    UniProtKB/TrEMBL
    A0A8N7TD34, F1RE28
    Conserved Domains (2) summary
    cd06203
    Location:274696
    methionine_synthase_red; Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred ...
    pfam00258
    Location:11147
    Flavodoxin_1

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    16855750..16905018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005162620.3XP_005162677.1  methionine synthase reductase isoform X2

    UniProtKB/TrEMBL
    A0A8M2B9H1
    Conserved Domains (3) summary
    cd06203
    Location:274695
    methionine_synthase_red; Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred ...
    COG0369
    Location:4695
    CysJ; Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
    pfam00258
    Location:11147
    Flavodoxin_1; Flavodoxin
  2. XM_684065.4XP_689157.2  methionine synthase reductase isoform X1

    UniProtKB/TrEMBL
    F1RE28
    Related
    ENSDARP00000066758.4, ENSDART00000066759.6
    Conserved Domains (2) summary
    cd06203
    Location:274696
    methionine_synthase_red; Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred ...
    pfam00258
    Location:11147
    Flavodoxin_1
  3. XM_005162621.4XP_005162678.1  methionine synthase reductase isoform X3

    UniProtKB/TrEMBL
    A0A0R4IZR6, A0A8M2B9T6
    Related
    ENSDARP00000141793.2, ENSDART00000165972.3
    Conserved Domains (3) summary
    cd06203
    Location:272694
    methionine_synthase_red; Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred ...
    TIGR01931
    Location:3694
    cysJ; sulfite reductase [NADPH] flavoprotein, alpha-component
    pfam00258
    Location:16145
    Flavodoxin_1; Flavodoxin