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UBFD1 ubiquitin family domain containing 1 [ Homo sapiens (human) ]

Gene ID: 56061, updated on 1-Aug-2020

Summary

Official Symbol
UBFD1provided by HGNC
Official Full Name
ubiquitin family domain containing 1provided by HGNC
Primary source
HGNC:HGNC:30565
See related
Ensembl:ENSG00000103353
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
UBPH
Expression
Ubiquitous expression in testis (RPKM 14.6), thyroid (RPKM 8.8) and 25 other tissues See more
Orthologs

Genomic context

See UBFD1 in Genome Data Viewer
Location:
16p12.2
Exon count:
10
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (23557557..23574393)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (23568856..23585710)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene glutamyl-tRNA synthetase 2, mitochondrial Neighboring gene Sharpr-MPRA regulatory region 1793 Neighboring gene SUB1 pseudogene 4 Neighboring gene NADH:ubiquinone oxidoreductase subunit AB1 Neighboring gene partner and localizer of BRCA2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ38870, FLJ42145

General protein information

Preferred Names
ubiquitin domain-containing protein UBFD1
Names
ubiquitin-binding protein homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019116.3NP_061989.2  ubiquitin domain-containing protein UBFD1

    See identical proteins and their annotated locations for NP_061989.2

    Status: VALIDATED

    Source sequence(s)
    AC008870, AK092696
    Consensus CDS
    CCDS10613.2
    UniProtKB/Swiss-Prot
    O14562
    Related
    ENSP00000379217.3, ENST00000395878.8
    Conserved Domains (2) summary
    smart00213
    Location:86155
    UBQ; Ubiquitin homologues
    pfam00240
    Location:89156
    ubiquitin; Ubiquitin family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20200522

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    23557557..23574393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011545894.3XP_011544196.1  ubiquitin domain-containing protein UBFD1 isoform X2

    Conserved Domains (2) summary
    smart00213
    Location:86155
    UBQ; Ubiquitin homologues
    pfam00240
    Location:89156
    ubiquitin; Ubiquitin family
  2. XM_017023459.2XP_016878948.1  ubiquitin domain-containing protein UBFD1 isoform X1

  3. XM_017023460.2XP_016878949.1  ubiquitin domain-containing protein UBFD1 isoform X3

RNA

  1. XR_429678.4 RNA Sequence

  2. XR_950816.3 RNA Sequence

  3. XR_950818.3 RNA Sequence

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