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si:dkey-33c12.2 si:dkey-33c12.2 [ Danio rerio (zebrafish) ]

Gene ID: 560031, updated on 8-Sep-2017
Official Symbol
si:dkey-33c12.2provided by ZNC
Official Full Name
si:dkey-33c12.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-081028-15
See related
Ensembl:ENSDARG00000092625 Vega:OTTDARG00000039363
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
See si:dkey-33c12.2 in Genome Data Viewer Map Viewer
Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (34047281..34104485)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (34156788..34160626)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase pim-3-like Neighboring gene Pim proto-oncogene, serine/threonine kinase, related 149 Neighboring gene aurora kinase-like Neighboring gene serine protease HTRA2, mitochondrial-like Neighboring gene Pim proto-oncogene, serine/threonine kinase, related 144 Neighboring gene si:busm1-sl7.2 Neighboring gene Pim proto-oncogene, serine/threonine kinase, related 146

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Homology

Preferred Names
serine protease HTRA2, mitochondrial; si:dkey-33c12.2

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    34047281..34104485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017358066.2XP_017213555.1  serine protease HTRA2, mitochondrial isoform X1

    UniProtKB/TrEMBL
    F1Q918
    Related
    ENSDARP00000115532.2, OTTDARP00000044325
    Conserved Domains (2) summary
    cd00987
    Location:102186
    PDZ_serine_protease; PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind ...
    pfam13365
    Location:161
    Trypsin_2; Trypsin-like peptidase domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394793.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    487954..500775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472338.1XP_021328013.1  serine protease HTRA2, mitochondrial isoform X2

    Conserved Domains (1) summary
    cl28339
    Location:1177
    DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
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