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inpp4b inositol polyphosphate-4-phosphatase type II B [ Danio rerio (zebrafish) ]

Gene ID: 560006, updated on 4-Jan-2025

Summary

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Official Symbol
inpp4bprovided by ZNC
Official Full Name
inositol polyphosphate-4-phosphatase type II Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-090312-97
See related
Ensembl:ENSDARG00000075201 AllianceGenome:ZFIN:ZDB-GENE-090312-97
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-236d22.1
Summary
Predicted to enable phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity. Predicted to be located in membrane. Orthologous to human INPP4B (inositol polyphosphate-4-phosphatase type II B). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See inpp4b in Genome Data Viewer
Location:
chromosome: 1
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (52943111..53227341)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (52308402..52591148)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137495829 Neighboring gene PAT1 homolog 1, processing body mRNA decay factor Neighboring gene SNF2 related chromatin remodeling ATPase 5 Neighboring gene uncharacterized LOC137495826 Neighboring gene interleukin 15 Neighboring gene zinc finger protein 330

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
inositol polyphosphate 4-phosphatase type II; type II inositol 3,4-bisphosphate 4-phosphatase
Names
inositol polyphosphate-4-phosphatase, type II
XP_005160208.1
XP_005160209.1
XP_005160210.1
XP_009292926.1
XP_021333041.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    52943111..53227341
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005160151.5 → XP_005160208.1  inositol polyphosphate 4-phosphatase type II isoform X3

    UniProtKB/TrEMBL
    A0A8M2B708
    Related
    ENSDARP00000113043.1, ENSDART00000147683.3

  2. XM_009294651.4 → XP_009292926.1  inositol polyphosphate 4-phosphatase type II isoform X1

    UniProtKB/TrEMBL
    A0A8M3AKS0

  3. XM_021477366.2 → XP_021333041.1  inositol polyphosphate 4-phosphatase type II isoform X2

    UniProtKB/TrEMBL
    A0A8M9QBK0
    Related
    ENSDARP00000103422.4, ENSDART00000108492.4

  4. XM_005160153.5 → XP_005160210.1  inositol polyphosphate 4-phosphatase type II isoform X4

    See identical proteins and their annotated locations for XP_005160210.1

    UniProtKB/TrEMBL
    A0A8M2B718

  5. XM_005160152.5 → XP_005160209.1  inositol polyphosphate 4-phosphatase type II isoform X4

    See identical proteins and their annotated locations for XP_005160209.1

    UniProtKB/TrEMBL
    A0A8M2B718

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001145574.1: Suppressed sequence

    Description
    NM_001145574.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
Nucleotide Protein Strain
Heading Accession and Version

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