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BCAP29 B cell receptor associated protein 29 [ Homo sapiens (human) ]

Gene ID: 55973, updated on 21-Dec-2019

Summary

Official Symbol
BCAP29provided by HGNC
Official Full Name
B cell receptor associated protein 29provided by HGNC
Primary source
HGNC:HGNC:24131
See related
Ensembl:ENSG00000075790
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BAP29
Expression
Ubiquitous expression in thyroid (RPKM 19.4), testis (RPKM 16.0) and 24 other tissues See more
Orthologs

Genomic context

See BCAP29 in Genome Data Viewer
Location:
7q22.3
Exon count:
13
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (107580007..107623317)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (107220422..107263762)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene component of oligomeric golgi complex 5 Neighboring gene G protein-coupled receptor 22 Neighboring gene DUS4L-BCAP29 readthrough Neighboring gene dihydrouridine synthase 4 like Neighboring gene uncharacterized LOC105375443 Neighboring gene WBP1L pseudogene 2 Neighboring gene BANF1 pseudogene 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ53907, DKFZp686M2086

Gene Ontology Provided by GOA

Process Evidence Code Pubs
ER to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
apoptotic process IEA
Inferred from Electronic Annotation
more info
 
intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 
osteoblast differentiation HDA PubMed 
protein localization to endoplasmic reticulum exit site IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane HDA PubMed 

General protein information

Preferred Names
B-cell receptor-associated protein 29
Names
BCR-associated protein 29

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008405.4NP_001008405.1  B-cell receptor-associated protein 29 isoform a

    See identical proteins and their annotated locations for NP_001008405.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (a).
    Source sequence(s)
    AC004839
    Consensus CDS
    CCDS34730.1
    UniProtKB/Swiss-Prot
    Q9UHQ4
    UniProtKB/TrEMBL
    E9PAJ1
    Related
    ENSP00000400718.2, ENST00000445771.6
    Conserved Domains (1) summary
    pfam05529
    Location:1220
    Bap31; B-cell receptor-associated protein 31-like
  2. NM_001363482.1NP_001350411.1  B-cell receptor-associated protein 29 isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4), as well as variant 8, encodes isoform c.
    Source sequence(s)
    AC004839, AC078937
    Related
    ENSP00000419681.1, ENST00000491150.5
    Conserved Domains (1) summary
    pfam05529
    Location:1220
    Bap31; B-cell receptor-associated protein 31-like
  3. NM_001363483.2NP_001350412.1  B-cell receptor-associated protein 29 isoform d

    Status: VALIDATED

    Source sequence(s)
    AC004839
    Conserved Domains (1) summary
    pfam05529
    Location:1220
    Bap31; B-cell receptor-associated protein 31-like
  4. NM_001371353.1NP_001358282.1  B-cell receptor-associated protein 29 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6), as well as variants 2 and 7, encodes isoform b.
    Source sequence(s)
    AC004839
  5. NM_001371354.1NP_001358283.1  B-cell receptor-associated protein 29 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7), as well as variants 2 and 6, encodes isoform b.
    Source sequence(s)
    AC004839
  6. NM_001371355.1NP_001358284.1  B-cell receptor-associated protein 29 isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8), as well as variant 4, encodes isoform c.
    Source sequence(s)
    AC004839, AC078937
  7. NM_001371356.1NP_001358285.1  B-cell receptor-associated protein 29 isoform e

    Status: VALIDATED

    Source sequence(s)
    AC004839
  8. NM_001371357.1NP_001358286.1  B-cell receptor-associated protein 29 isoform f

    Status: VALIDATED

    Source sequence(s)
    AC004839, AC078937
    Related
    ENSP00000409350.1, ENST00000457837.5
  9. NM_018844.4NP_061332.2  B-cell receptor-associated protein 29 isoform b

    See identical proteins and their annotated locations for NP_061332.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, and lacks an alternate exon in the 3' coding region that causes a frameshift, compared to variant 1. The resulting isoform (b) is shorter and has a distinct C-terminus, compared to isoform a. Variants 2, 6, and 7 all encode the same isoform (b).
    Source sequence(s)
    AC004839
    Consensus CDS
    CCDS34731.1
    UniProtKB/Swiss-Prot
    Q9UHQ4
    UniProtKB/TrEMBL
    E9PAJ1
    Related
    ENSP00000005259.4, ENST00000005259.8
    Conserved Domains (1) summary
    pfam05529
    Location:1220
    Bap31; B-cell receptor-associated protein 31-like

RNA

  1. NR_027830.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' region and lacks an exon in the 3' region, compared to variant 1. This variant is represented as non-coding because it lacks a portion of the 5' coding region including the translational start codon, compared to variant 1, and there is uncertainty about its coding capacity.
    Source sequence(s)
    AC004839
  2. NR_163926.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004839, AC078937
  3. NR_163927.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004839, AC078937
  4. NR_163928.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004839
  5. NR_163929.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004839
  6. NR_163930.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004839
  7. NR_163931.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004839
  8. NR_163932.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004839
  9. NR_163933.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004839
  10. NR_163934.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004839
  11. NR_163935.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004839
  12. NR_163936.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004839
  13. NR_163937.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004839
  14. NR_163938.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004839

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    107580007..107623317
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_017852930.1 Reference GRCh38.p13 PATCHES

    Range
    425662..468267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001008406.1: Suppressed sequence

    Description
    NM_001008406.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
  2. NM_001008407.1: Suppressed sequence

    Description
    NM_001008407.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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