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scly selenocysteine lyase [ Danio rerio (zebrafish) ]

Gene ID: 559537, updated on 13-Jun-2020

Summary

Official Symbol
sclyprovided by ZNC
Official Full Name
selenocysteine lyaseprovided by ZNC
Primary source
ZFIN:ZDB-GENE-080204-30
See related
Ensembl:ENSDARG00000073813
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:171514
Orthologs

Genomic context

See scly in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (27275698..27292921)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (27285144..27300297)
103 previous assembly Zv9 (GCF_000002035.4) 6 NC_007117.5 (26983944..26997217)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene zgc:103559 Neighboring gene kinesin family member 1Aa Neighboring gene espin-like Neighboring gene espin like a

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
catalytic activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
selenocysteine lyase
NP_001103853.1
XP_021332563.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110383.1NP_001103853.1  selenocysteine lyase

    See identical proteins and their annotated locations for NP_001103853.1

    Status: PROVISIONAL

    Source sequence(s)
    BC154449
    UniProtKB/TrEMBL
    A8WFT4
    Related
    ENSDARP00000099679.1, ENSDART00000114347.3
    Conserved Domains (1) summary
    COG1104
    Location:36449
    NifS; Cysteine sulfinate desulfinase/cysteine desulfurase or related enzyme [Amino acid transport and metabolism]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    27275698..27292921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021476888.1XP_021332563.1  selenocysteine lyase isoform X1

    Conserved Domains (1) summary
    COG1104
    Location:36449
    NifS; Cysteine sulfinate desulfinase/cysteine desulfurase or related enzyme [Amino acid transport and metabolism]
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