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rnf216 ring finger protein 216 [ Danio rerio (zebrafish) ]

Gene ID: 559441, updated on 13-Jun-2020

Summary

Official Symbol
rnf216provided by ZNC
Official Full Name
ring finger protein 216provided by ZNC
Primary source
ZFIN:ZDB-GENE-081104-199
See related
Ensembl:ENSDARG00000087893
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-255l18.3
Orthologs

Genomic context

See rnf216 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
17
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (40605119..40664888, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (40463261..40523030, complement)
103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (40599901..40660015, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene actin, beta 2 Neighboring gene fascin actin-bundling protein 1a Neighboring gene urotensin-2 receptor 5 Neighboring gene SMAD specific E3 ubiquitin protein ligase 1

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
camera-type eye development IGI
Inferred from Genetic Interaction
more info
PubMed 
camera-type eye development IMP
Inferred from Mutant Phenotype
more info
PubMed 
cerebellum development IGI
Inferred from Genetic Interaction
more info
PubMed 
cerebellum development IMP
Inferred from Mutant Phenotype
more info
PubMed 

General protein information

Preferred Names
E3 ubiquitin-protein ligase RNF216
XP_687871.3

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    40605119..40664888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_682779.8XP_687871.3  E3 ubiquitin-protein ligase RNF216

    UniProtKB/TrEMBL
    E7F859
    Related
    ENSDARP00000117304.1, ENSDART00000138783.2
    Conserved Domains (1) summary
    pfam17061
    Location:77212
    PARM; PARM
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