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Rp9 retinitis pigmentosa 9 (human) [ Mus musculus (house mouse) ]

Gene ID: 55934, updated on 5-Feb-2023

Summary

Official Symbol
Rp9provided by MGI
Official Full Name
retinitis pigmentosa 9 (human)provided by MGI
Primary source
MGI:MGI:2157166
See related
Ensembl:ENSMUSG00000032239 AllianceGenome:MGI:2157166
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rp9h; PAP-1
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in cognition. Part of signal recognition particle receptor complex. Is expressed in several structures, including alimentary system; eye; integumental system; nervous system; and reproductive system. Human ortholog(s) of this gene implicated in retinitis pigmentosa 9. Orthologous to human RP9 (RP9 pre-mRNA splicing factor). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in colon adult (RPKM 56.5), duodenum adult (RPKM 55.0) and 28 other tissues See more
Orthologs
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Genomic context

See Rp9 in Genome Data Viewer
Location:
9; 9 A3
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (22359607..22379652, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (22448311..22468356, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S20 pseudogene Neighboring gene anillin, actin binding protein Neighboring gene microtubule associated tyrosine carboxypeptidase 2 Neighboring gene ribosomal protein L7A pseudogene Neighboring gene Bardet-Biedl syndrome 9 (human) Neighboring gene tubulin, beta 2B pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC106978, MGC144397, MGC144398

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 
involved_in cognition ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in nuclear speck ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
part_of signal recognition particle receptor complex IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
retinitis pigmentosa 9 protein homolog
Names
Pim-1 associated protein
pim-1-associated protein
retinitis pigmentosa 9 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_018739.2NP_061209.1  retinitis pigmentosa 9 protein homolog

    See identical proteins and their annotated locations for NP_061209.1

    Status: VALIDATED

    Source sequence(s)
    AI481652, AK168391, BY239981
    Consensus CDS
    CCDS40564.1
    UniProtKB/Swiss-Prot
    P97762
    UniProtKB/TrEMBL
    A0A6P5QDE5, A0A8C6I0E6, Q3TH81
    Related
    ENSMUSP00000034763.9, ENSMUST00000034763.10

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    22359607..22379652 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)