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rorca RAR-related orphan receptor C a [ Danio rerio (zebrafish) ]

Gene ID: 559245, updated on 3-Oct-2019

Summary

Official Symbol
rorcaprovided by ZNC
Official Full Name
RAR-related orphan receptor C aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-990415-250
See related
Ensembl:ENSDARG00000057231
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
rorc; rorg
Annotation information
Annotation category: partial on reference assembly

Genomic context

See rorca in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (18885423..18893217, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (18855006..18862800, complement)
103 previous assembly Zv9 (GCF_000002035.4) 8 NC_007119.5 (19410368..19418162, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene SH3-domain GRB2-like 1b Neighboring gene MPN domain containing Neighboring gene sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb Neighboring gene si:ch73-272h24.1

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
steroid hormone receptor activity IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
RAR-related orphan receptor C a
Names
NR1F3-A
RAR-related orphan receptor G
RORgamma-A
RORgamma1
retinoid-related orphan receptor c

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001082819.1NP_001076288.1  RAR-related orphan receptor C a

    See identical proteins and their annotated locations for NP_001076288.1

    Status: PROVISIONAL

    Source sequence(s)
    EF107094
    UniProtKB/TrEMBL
    A3R3K0
    Related
    ENSDARP00000074291.5, ENSDART00000079840.6
    Conserved Domains (2) summary
    cd06968
    Location:397
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:229467
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    18885423..18893217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394718.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    43342..51136 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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