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gbe1b glucan (1,4-alpha-), branching enzyme 1b [ Danio rerio (zebrafish) ]

Gene ID: 559212, updated on 17-Nov-2020

Summary

Official Symbol
gbe1bprovided by ZNC
Official Full Name
glucan (1,4-alpha-), branching enzyme 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-110914-16
See related
Ensembl:ENSDARG00000099524
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
gbe1; si:ch211-247m23.1
Orthologs

Genomic context

See gbe1b in Genome Data Viewer
Location:
chromosome: 15
Exon count:
17
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (7353421..7598480, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (7377333..7622406, complement)
103 previous assembly Zv9 (GCF_000002035.4) 15 NC_007126.5 (7294699..7579430, complement)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene hairy-related 13 Neighboring gene solute carrier family 7 member 1b Neighboring gene cell adhesion molecule 2b Neighboring gene BTB and CNC homology 1, basic leucine zipper transcription factor 1 a

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
1,4-alpha-glucan branching enzyme activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
1,4-alpha-glucan branching enzyme activity IEA
Inferred from Electronic Annotation
more info
 
1,4-alpha-glucan branching enzyme activity (using a glucosylated glycogenin as primer for glycogen synthesis) IEA
Inferred from Electronic Annotation
more info
 
catalytic activity IEA
Inferred from Electronic Annotation
more info
 
cation binding IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
carbohydrate metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 
glycogen biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
1,4-alpha-glucan-branching enzyme
Names
glucan (1,4-alpha-), branching enzyme 1
XP_009289773.1
XP_009289774.1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    7353421..7598480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009291498.3XP_009289773.1  1,4-alpha-glucan-branching enzyme isoform X1

    Related
    ENSDARP00000137627.2, ENSDART00000165898.3
    Conserved Domains (4) summary
    cd02854
    Location:68163
    E_set_GBE_euk_N; N-terminal Early set domain associated with the catalytic domain of eukaryotic glycogen branching enzyme (also called 1,4 alpha glucan branching enzyme)
    cd11321
    Location:165570
    AmyAc_bac_euk_BE; Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes
    COG0296
    Location:56681
    GlgB; 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
    pfam02806
    Location:588683
    Alpha-amylase_C; Alpha amylase, C-terminal all-beta domain
  2. XM_009291499.2XP_009289774.1  1,4-alpha-glucan-branching enzyme isoform X2

    Conserved Domains (2) summary
    pfam02806
    Location:258353
    Alpha-amylase_C; Alpha amylase, C-terminal all-beta domain
    cl07893
    Location:1240
    AmyAc_family; Alpha amylase catalytic domain family
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