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CTTNBP2NL CTTNBP2 N-terminal like [ Homo sapiens (human) ]

Gene ID: 55917, updated on 13-Mar-2020

Summary

Official Symbol
CTTNBP2NLprovided by HGNC
Official Full Name
CTTNBP2 N-terminal likeprovided by HGNC
Primary source
HGNC:HGNC:25330
See related
Ensembl:ENSG00000143079 MIM:615100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in esophagus (RPKM 9.4), gall bladder (RPKM 9.0) and 23 other tissues See more
Orthologs

Genomic context

See CTTNBP2NL in Genome Data Viewer
Location:
1p13.2
Exon count:
8
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (112391085..112461164)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (112938800..113003786)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2884 Neighboring gene thioredoxin pseudogene 3 Neighboring gene microRNA 4256 Neighboring gene Wnt family member 2B Neighboring gene suppression of tumorigenicity 7 like

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ13278, DKFZp547A023

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein phosphatase 2A binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein phosphatase 2A binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
negative regulation of transmembrane transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of transporter activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein dephosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein dephosphorylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
actin cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
actin cytoskeleton IDA
Inferred from Direct Assay
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
CTTNBP2 N-terminal-like protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_018704.3NP_061174.1  CTTNBP2 N-terminal-like protein

    See identical proteins and their annotated locations for NP_061174.1

    Status: VALIDATED

    Source sequence(s)
    AL354760, AL598321, BE645464, DA238082, DB236769
    Consensus CDS
    CCDS845.1
    UniProtKB/Swiss-Prot
    Q9P2B4
    UniProtKB/TrEMBL
    A0A024R0C7
    Related
    ENSP00000271277.6, ENST00000271277.11
    Conserved Domains (2) summary
    pfam09727
    Location:5188
    CortBP2; Cortactin-binding protein-2
    cl23720
    Location:96246
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    112391085..112461164
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017001806.1XP_016857295.1  CTTNBP2 N-terminal-like protein isoform X1

    UniProtKB/Swiss-Prot
    Q9P2B4
    UniProtKB/TrEMBL
    A0A024R0C7
    Conserved Domains (2) summary
    pfam09727
    Location:5188
    CortBP2; Cortactin-binding protein-2
    cl23720
    Location:96246
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
  2. XM_011541781.2XP_011540083.1  CTTNBP2 N-terminal-like protein isoform X1

    See identical proteins and their annotated locations for XP_011540083.1

    UniProtKB/Swiss-Prot
    Q9P2B4
    UniProtKB/TrEMBL
    A0A024R0C7
    Conserved Domains (2) summary
    pfam09727
    Location:5188
    CortBP2; Cortactin-binding protein-2
    cl23720
    Location:96246
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
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