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galnt1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [ Danio rerio (zebrafish) ]

Gene ID: 559073, updated on 9-Sep-2025
Official Symbol
galnt1provided by ZNC
Official Full Name
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2360
See related
Ensembl:ENSDARG00000061335 AllianceGenome:ZFIN:ZDB-GENE-030131-2360
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc05g08; wu:fc05g08; si:ch211-194b7.3
Summary
Predicted to enable polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation. Predicted to be located in Golgi cisterna membrane; Golgi membrane; and extracellular region. Predicted to be active in Golgi apparatus. Orthologous to human GALNT1 (polypeptide N-acetylgalactosaminyltransferase 1). [provided by Alliance of Genome Resources, Jul 2025]
Orthologs
human mouse all
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See galnt1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2025_04 current GRCz12tu (GCF_049306965.1) 16 NC_133191.1 (29986695..30223842)
RS_2024_08 previous assembly GRCz11 (GCF_000002035.6) 16 NC_007127.7 (26863442..27100475)

Chromosome 16 - NC_133191.1Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 35-29 Neighboring gene INO80 complex subunit C Neighboring gene uncharacterized LOC100333085 Neighboring gene transmembrane protein 245 Neighboring gene ferric-chelate reductase 1-like

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Related articles in PubMed

  1. Identification and expression analysis of zebrafish polypeptide α-N-acetylgalactosaminyltransferase Y-subfamily genes during embryonic development. Nakayama Y, et al. Gene Expr Patterns, 2014 Sep. PMID 25026003
  2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables polypeptide N-acetylgalactosaminyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
Preferred Names
polypeptide N-acetylgalactosaminyltransferase 1
XP_073782166.1
XP_073782167.1
XP_073782168.1
XP_687472.3

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RefSeqs of Annotated Genomes: GCF_049306965.1-RS_2025_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz12tu Primary Assembly

Genomic

  1. NC_133191.1 Reference GRCz12tu Primary Assembly

    Range
    29986695..30223842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_073926065.1 → XP_073782166.1  polypeptide N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A8N7TDI1, E7FDA0

  2. XM_682380.9 → XP_687472.3  polypeptide N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for XP_687472.3

    UniProtKB/TrEMBL
    A0A8N7TDI1, E7FDA0
    Related
    ENSDARP00000116122.1, ENSDART00000140673.3
    Conserved Domains (3) summary
    cd02510
    Location:117 → 417
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:430 → 548
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:430 → 546
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_073926067.1 → XP_073782168.1  polypeptide N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A8N7TDI1, E7FDA0

  4. XM_073926066.1 → XP_073782167.1  polypeptide N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A8N7TDI1, E7FDA0
Nucleotide Protein Strain
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