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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029785.2 RefSeqGene
- Range
-
7053..64843
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001001395.2 → NP_001001395.1 LIM domain only protein 3 isoform 1
See identical proteins and their annotated locations for NP_001001395.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) contains an alternate 5' non-coding exon compared to variant 1. Variants 1-4 encode the same isoform (1).
- Source sequence(s)
-
AF258348, AK294474, AL050152, BQ029059, DA780743
- Consensus CDS
-
CCDS8678.1
- UniProtKB/Swiss-Prot
- Q8TAP4, Q9UDD5
- UniProtKB/TrEMBL
- A0A024RAT1, Q9NYC6
- Related
- ENSP00000346689.1, ENST00000354662.5
- Conserved Domains (2) summary
-
- cd09388
Location:13 → 67
- LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
- cd09389
Location:77 → 131
- LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
-
NM_001243609.1 → NP_001230538.1 LIM domain only protein 3 isoform 1
See identical proteins and their annotated locations for NP_001230538.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs at the 5' end compared to variant 1. Variants 1-4 encode the same isoform (1).
- Source sequence(s)
-
AB044746, AF258348, AL050152, BQ029059, DA780743
- Consensus CDS
-
CCDS8678.1
- UniProtKB/Swiss-Prot
- Q8TAP4, Q9UDD5
- UniProtKB/TrEMBL
- A0A024RAT1, Q9NYC6
- Related
- ENSP00000412479.2, ENST00000441439.6
- Conserved Domains (2) summary
-
- cd09388
Location:13 → 67
- LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
- cd09389
Location:77 → 131
- LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
-
NM_001243610.1 → NP_001230539.1 LIM domain only protein 3 isoform 1
See identical proteins and their annotated locations for NP_001230539.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs at the 5' end compared to variant 1. Variants 1-4 encode the same isoform (1).
- Source sequence(s)
-
AL050152, BC050085, BQ029059
- Consensus CDS
-
CCDS8678.1
- UniProtKB/Swiss-Prot
- Q8TAP4, Q9UDD5
- UniProtKB/TrEMBL
-
A0A024RAT1
- Related
- ENSP00000413703.1, ENST00000447609.5
- Conserved Domains (2) summary
-
- cd09388
Location:13 → 67
- LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
- cd09389
Location:77 → 131
- LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
-
NM_001243611.1 → NP_001230540.1 LIM domain only protein 3 isoform 2
See identical proteins and their annotated locations for NP_001230540.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) contains an alternate 5' terminal exon compared to variant 1. This results in translation initiation from an in-frame upstream start codon, and an isoform (2) with a longer N-terminus compared to isoform 1.
- Source sequence(s)
-
AB044745, AL050152, BC026311, BQ029059, DC324870
- Consensus CDS
-
CCDS58211.1
- UniProtKB/Swiss-Prot
-
Q8TAP4
- Related
- ENSP00000261169.6, ENST00000261169.10
- Conserved Domains (2) summary
-
- cd09388
Location:24 → 78
- LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
- cd09389
Location:88 → 142
- LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
-
NM_001243612.1 → NP_001230541.1 LIM domain only protein 3 isoform 3
See identical proteins and their annotated locations for NP_001230541.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) contains an alternate 5' terminal exon compared to variant 1. This results in translation initiation from an in-frame upstream start codon, and an isoform (3) with a longer N-terminus compared to isoform 1.
- Source sequence(s)
-
AK294474, AL050152, BQ029059
- Consensus CDS
-
CCDS58212.1
- UniProtKB/Swiss-Prot
-
Q8TAP4
- Related
- ENSP00000446463.1, ENST00000541295.5
- Conserved Domains (2) summary
-
- cd09388
Location:31 → 85
- LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
- cd09389
Location:95 → 149
- LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
-
NM_001243613.1 → NP_001230542.1 LIM domain only protein 3 isoform 4
See identical proteins and their annotated locations for NP_001230542.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) differs at the 5' end, and contains an additional in-frame coding exon compared to variant 1. This results in a longer isoform (4) with an internal protein segment not found in isoform 1.
- Source sequence(s)
-
AK294909, AL050152, BQ029059
- Consensus CDS
-
CCDS58210.1
- UniProtKB/Swiss-Prot
-
Q8TAP4
- Related
- ENSP00000442786.1, ENST00000540445.5
- Conserved Domains (2) summary
-
- cd09389
Location:99 → 153
- LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
- cl02475
Location:13 → 49
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_018640.5 → NP_061110.2 LIM domain only protein 3 isoform 1
See identical proteins and their annotated locations for NP_061110.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the predominant isoform (1). Variants 1-4 encode the same isoform.
- Source sequence(s)
-
AL050152, BC026311, BQ029059
- Consensus CDS
-
CCDS8678.1
- UniProtKB/Swiss-Prot
- Q8TAP4, Q9UDD5
- UniProtKB/TrEMBL
-
A0A024RAT1
- Related
- ENSP00000440099.1, ENST00000537304.6
- Conserved Domains (2) summary
-
- cd09388
Location:13 → 67
- LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
- cd09389
Location:77 → 131
- LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
RNA
-
NR_045012.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) differs at the 5' end and contains an additional internal exon compared to variant 1. It is represented as non-coding because the use of the translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AF258348, AK294909, AK308826, AL050152, BQ029059, DA780743
-
NR_045013.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (9) differs at the 5' end and uses an alternate donor splice site at an internal exon compared to variant 1. It is represented as non-coding because the use of the translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AF258348, AL050152, BC017777, BQ029059, DA780743
- Related
-
ENST00000396205.6
-
NR_045014.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (10) differs at the 5' end and uses an alternate donor splice site at an internal exon compared to variant 1. It is represented as non-coding because the use of the translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AF258348, AL050152, BC017777, BQ029059, DA780743