NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_015851.1 RefSeqGene
- Range
-
5261..248588
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001166418.2 → NP_001159890.1 histone deacetylase 8 isoform 2
See identical proteins and their annotated locations for NP_001159890.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks two alternate exons in the 5' coding region, compared to variant 1, resulting in a protein (isoform 2) that maintains the reading frame but is shorter, compared to isoform 1.
- Source sequence(s)
-
AK296641, BC050433
- Consensus CDS
-
CCDS55449.1
- UniProtKB/Swiss-Prot
-
Q9BY41
- Related
- ENSP00000362691.4, ENST00000373589.9
- Conserved Domains (1) summary
-
- cl17011
Location:16 → 286
- Arginase_HDAC; Arginase-like and histone-like hydrolases
-
NM_001166419.2 → NP_001159891.1 histone deacetylase 8 isoform 3
See identical proteins and their annotated locations for NP_001159891.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks several alternate 3' exons and uses an alternate 3' terminal exon, compared to variant 1. The encoded isoform (3) has a shorter and distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AK074326
- Consensus CDS
-
CCDS55451.1
- UniProtKB/Swiss-Prot
-
Q9BY41
- Related
- ENSP00000414486.2, ENST00000439122.7
- Conserved Domains (1) summary
-
- cl17011
Location:16 → 246
- Arginase_HDAC; Arginase-like and histone-like hydrolases
-
NM_001166420.2 → NP_001159892.1 histone deacetylase 8 isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks a large portion of the 3' coding region and has a distinct 3' UTR, compared to variant 1. The encoded isoform (5) has a shorter C-terminus, compared to isoform 1.
- Source sequence(s)
-
AI651236, BF514915, BQ189619
- Consensus CDS
-
CCDS55450.1
- UniProtKB/Swiss-Prot
-
Q9BY41
- Related
- ENSP00000362655.1, ENST00000373554.6
- Conserved Domains (1) summary
-
- cl17011
Location:16 → 146
- Arginase_HDAC; Arginase-like and histone-like hydrolases
-
NM_001166422.2 → NP_001159894.1 histone deacetylase 8 isoform 5
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks multiple alternate 3' exons and uses an alternate 3' terminal exon, compared to variant 1. The encoded isoform (5) has a shorter and distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AI651236, AI916593, BP229332
- Consensus CDS
-
CCDS55452.1
- UniProtKB/Swiss-Prot
-
Q9BY41
- Related
- ENSP00000362657.3, ENST00000373556.8
- Conserved Domains (1) summary
-
- cl17011
Location:16 → 147
- Arginase_HDAC; Arginase-like and histone-like hydrolases
-
NM_001166448.2 → NP_001159920.1 histone deacetylase 8 isoform 6
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) lacks multiple alternate coding exons and uses an alternate 3' terminal exon, compared to variant 1. The encoded isoform (3) maintains the reading frame, but is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AK074326, BP229332, BQ632790
- Consensus CDS
-
CCDS55448.1
- UniProtKB/Swiss-Prot
-
Q9BY41
- Related
- ENSP00000362660.4, ENST00000373559.8
- Conserved Domains (1) summary
-
- cl17011
Location:16 → 129
- Arginase_HDAC; Arginase-like and histone-like hydrolases
-
NM_001410725.1 → NP_001397654.1 histone deacetylase 8 isoform 7
Status: REVIEWED
- Source sequence(s)
-
AL133500, BX295542
- Consensus CDS
-
CCDS94633.1
- UniProtKB/TrEMBL
-
A0A3B3IS68
-
NM_001410727.1 → NP_001397656.1 histone deacetylase 8 isoform 8
Status: REVIEWED
- Source sequence(s)
-
AL133500, BX295542
- Consensus CDS
-
CCDS94631.1
- UniProtKB/TrEMBL
-
A6NFW1
-
NM_001410728.1 → NP_001397657.1 histone deacetylase 8 isoform 9
Status: REVIEWED
- Source sequence(s)
-
AL133500, BX295542
- Consensus CDS
-
CCDS94630.1
- UniProtKB/TrEMBL
-
A0A3B3IT30
-
NM_001410729.1 → NP_001397658.1 histone deacetylase 8 isoform 10
Status: REVIEWED
- Source sequence(s)
-
AL133500, BX295542
- Consensus CDS
-
CCDS94634.1
- UniProtKB/TrEMBL
-
A0A3B3ISS7
-
NM_001410730.1 → NP_001397659.1 histone deacetylase 8 isoform 11
Status: REVIEWED
- Source sequence(s)
-
AL133500, BX295542
- Consensus CDS
-
CCDS94632.1
- UniProtKB/TrEMBL
-
A0A3B3IU01
-
NM_018486.3 → NP_060956.1 histone deacetylase 8 isoform 1
See identical proteins and their annotated locations for NP_060956.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AJ277724, BC050433, BP229332
- Consensus CDS
-
CCDS14420.1
- UniProtKB/Swiss-Prot
- Q9BY41, Q9NYH4
- Related
- ENSP00000362674.3, ENST00000373573.9
- Conserved Domains (1) summary
-
- cd10000
Location:16 → 377
- HDAC8; Histone deacetylase 8 (HDAC8)
RNA
-
NR_051952.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) lacks an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AK298767, BC050433, DC352390
- Related
-
ENST00000650471.1
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p14 Primary Assembly
- Range
-
72329516..72572843 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047442255.1 → XP_047298211.1 histone deacetylase 8 isoform X10
-
XM_017029644.3 → XP_016885133.2 histone deacetylase 8 isoform X8
-
XM_017029642.2 → XP_016885131.2 histone deacetylase 8 isoform X5
- Related
- ENSP00000497568.1, ENST00000647654.1
-
XM_017029645.3 → XP_016885134.2 histone deacetylase 8 isoform X9
- Related
- ENSP00000496818.1, ENST00000648139.1
-
XM_017029643.3 → XP_016885132.2 histone deacetylase 8 isoform X7
-
XM_017029641.3 → XP_016885130.2 histone deacetylase 8 isoform X3
- Related
- ENSP00000362685.2, ENST00000373583.6
- Conserved Domains (1) summary
-
- cd10000
Location:16 → 351
- HDAC8; Histone deacetylase 8 (HDAC8)
-
XM_017029640.3 → XP_016885129.2 histone deacetylase 8 isoform X2
- Conserved Domains (1) summary
-
- cd10000
Location:16 → 345
- HDAC8; Histone deacetylase 8 (HDAC8)
-
XM_011530986.4 → XP_011529288.3 histone deacetylase 8 isoform X1
- Related
- ENSP00000497188.1, ENST00000647886.1
- Conserved Domains (1) summary
-
- cd10000
Location:16 → 371
- HDAC8; Histone deacetylase 8 (HDAC8)
-
XM_047442256.1 → XP_047298212.1 histone deacetylase 8 isoform X11
-
XM_047442257.1 → XP_047298213.1 histone deacetylase 8 isoform X13
-
XM_047442252.1 → XP_047298208.1 histone deacetylase 8 isoform X4
- Related
- ENSP00000396424.2, ENST00000415409.6
-
XM_047442253.1 → XP_047298209.1 histone deacetylase 8 isoform X6
- Related
- ENSP00000497764.1, ENST00000648834.1
-
XM_017029647.3 → XP_016885136.2 histone deacetylase 8 isoform X12
- Related
- ENSP00000498144.1, ENST00000650126.1
- Conserved Domains (1) summary
-
- cl17011
Location:16 → 220
- Arginase_HDAC; Arginase-like and histone-like hydrolases
RNA
-
XR_938402.4 RNA Sequence
- Related
-
ENST00000647594.1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1 Alternate T2T-CHM13v2.0
- Range
-
70762405..71005758 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)