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abch1 ATP-binding cassette, sub-family H, member 1 [ Danio rerio (zebrafish) ]

Gene ID: 558667, updated on 1-Aug-2018

Summary

Official Symbol
abch1provided by ZNC
Official Full Name
ATP-binding cassette, sub-family H, member 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-050517-42
See related
Ensembl:ENSDARG00000071341 Vega:OTTDARG00000024808
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
si:dkey-148f10.7; si:ch211-154e15.12

Genomic context

See abch1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
22
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (24536489..24569830, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (24518112..24551382, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene UDP-glucose pyrophosphorylase 2b Neighboring gene pellino E3 ubiquitin protein ligase 1b Neighboring gene aftiphilin b Neighboring gene rearranged L-myc fusion

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATPase activity IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
ATP-binding cassette (ABC) transporter complex IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ABC transporter G family member 20; ABC transporter G family member 23

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    24536489..24569830 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_681911.7XP_687003.4  ABC transporter G family member 23 isoform X1

    Conserved Domains (4) summary
    cd03230
    Location:39247
    ABC_DR_subfamily_A; ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A
    TIGR03864
    Location:38272
    PQQ_ABC_ATP; ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    pfam01061
    Location:507673
    ABC2_membrane; ABC-2 type transporter
    pfam12698
    Location:352707
    ABC2_membrane_3; ABC-2 family transporter protein
  2. XM_021467412.1XP_021323087.1  ABC transporter G family member 20 isoform X2

    Conserved Domains (2) summary
    COG1131
    Location:13236
    CcmA; ABC-type multidrug transport system, ATPase component [Defense mechanisms]
    pfam12698
    Location:327680
    ABC2_membrane_3; ABC-2 family transporter protein
  3. XM_005158536.4XP_005158593.1  ABC transporter G family member 20 isoform X2

    See identical proteins and their annotated locations for XP_005158593.1

    Related
    ENSDARP00000114137.1, ENSDART00000135086.3
    Conserved Domains (2) summary
    COG1131
    Location:13236
    CcmA; ABC-type multidrug transport system, ATPase component [Defense mechanisms]
    pfam12698
    Location:327680
    ABC2_membrane_3; ABC-2 family transporter protein

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394990.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    92693..124761 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473164.1XP_021328839.1  ABC transporter G family member 20 isoform X1

    Conserved Domains (2) summary
    COG1131
    Location:38261
    CcmA; ABC-type multidrug transport system, ATPase component [Defense mechanisms]
    pfam12698
    Location:352705
    ABC2_membrane_3; ABC-2 family transporter protein
  2. XM_021473165.1XP_021328840.1  ABC transporter G family member 20 isoform X2

    Conserved Domains (2) summary
    COG1131
    Location:13236
    CcmA; ABC-type multidrug transport system, ATPase component [Defense mechanisms]
    pfam12698
    Location:327680
    ABC2_membrane_3; ABC-2 family transporter protein
  3. XM_021473167.1XP_021328842.1  ABC transporter G family member 20 isoform X2

    Conserved Domains (2) summary
    COG1131
    Location:13236
    CcmA; ABC-type multidrug transport system, ATPase component [Defense mechanisms]
    pfam12698
    Location:327680
    ABC2_membrane_3; ABC-2 family transporter protein
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