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BEX1 brain expressed X-linked 1 [ Homo sapiens (human) ]

Gene ID: 55859, updated on 7-Jun-2020

Summary

Official Symbol
BEX1provided by HGNC
Official Full Name
brain expressed X-linked 1provided by HGNC
Primary source
HGNC:HGNC:1036
See related
Ensembl:ENSG00000133169 MIM:300690
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BEX2; HBEX2; HGR74-h
Expression
Biased expression in brain (RPKM 178.4), testis (RPKM 38.4) and 3 other tissues See more
Orthologs

Genomic context

See BEX1 in Genome Data Viewer
Location:
Xq22.1; Xq22
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (103062651..103064171, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (102317581..102319168, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 630 Neighboring gene RAB40A like Neighboring gene NUDT19 pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 49 Neighboring gene zinc finger protein 770 pseudogene Neighboring gene nuclear RNA export factor 3 Neighboring gene ribosomal protein SA pseudogene 59

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA polymerase II activating transcription factor binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
signaling receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
nervous system development IEA
Inferred from Electronic Annotation
more info
 
positive regulation of DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor complex IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
protein BEX1
Names
brain-expressed X-linked protein 1
ovarian granulosa cell 13.0 kDa protein hGR74

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_018476.4NP_060946.3  protein BEX1

    See identical proteins and their annotated locations for NP_060946.3

    Status: VALIDATED

    Source sequence(s)
    AF237783, AL008708, BM465948
    Consensus CDS
    CCDS35354.1
    UniProtKB/Swiss-Prot
    Q9HBH7
    Related
    ENSP00000361813.3, ENST00000372728.4
    Conserved Domains (1) summary
    pfam04538
    Location:14121
    BEX; Brain expressed X-linked like family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    103062651..103064171 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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