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IDI2-AS1 IDI2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 55853, updated on 11-Sep-2019

Summary

Official Symbol
IDI2-AS1provided by HGNC
Official Full Name
IDI2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:30885
See related
Ensembl:ENSG00000232656 MIM:615391
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HT009; IDI2-AS; C10orf110
Expression
Ubiquitous expression in bone marrow (RPKM 15.7), liver (RPKM 9.8) and 24 other tissues See more

Genomic context

See IDI2-AS1 in Genome Data Viewer
Location:
10p15.3
Exon count:
5
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (1022637..1044201)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (1068577..1090141)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984285 Neighboring gene Sharpr-MPRA regulatory region 2332 Neighboring gene GTP binding protein 4 Neighboring gene isopentenyl-diphosphate delta isomerase 2 Neighboring gene isopentenyl-diphosphate delta isomerase 1 Neighboring gene WD repeat domain 37 Neighboring gene uncharacterized LOC105376344

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.
NHGRI GWA Catalog

General gene information

Markers

Other Names

  • IDI2 antisense RNA (non-protein coding)
  • IDI2 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024628.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant is designated as variant 1.
    Source sequence(s)
    AK314921, BC018729
    Related
    ENST00000428780.3
  2. NR_024629.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, as compared to variant 1.
    Source sequence(s)
    AK314921, BC018729
  3. NR_027708.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains an alternate internal exon, as compared to variant 1.
    Source sequence(s)
    AC022536, AK314921, BC018729, BC050694
  4. NR_027709.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) contains an alternate internal exon, as compared to variant 1.
    Source sequence(s)
    AC022536, AK314921, BC018729, BC050694, BF724542

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    1022637..1044201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_018470.1: Suppressed sequence

    Description
    NM_018470.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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