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UTP6 UTP6 small subunit processome component [ Homo sapiens (human) ]

Gene ID: 55813, updated on 7-Jun-2020

Summary

Official Symbol
UTP6provided by HGNC
Official Full Name
UTP6 small subunit processome componentprovided by HGNC
Primary source
HGNC:HGNC:18279
See related
Ensembl:ENSG00000108651
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HCA66; C17orf40
Expression
Ubiquitous expression in lymph node (RPKM 15.1), testis (RPKM 14.9) and 25 other tissues See more
Orthologs

Genomic context

See UTP6 in Genome Data Viewer
Location:
17q11.2
Exon count:
20
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (31860904..31901708, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (30190190..30228729, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 4911 Neighboring gene coordinator of PRMT5 and differentiation stimulator Neighboring gene SUZ12 polycomb repressive complex 2 subunit Neighboring gene RNA, 5S ribosomal pseudogene 437 Neighboring gene SUZ12 PRS4 recombination region

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
snoRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
rRNA processing TAS
Traceable Author Statement
more info
 
Component Evidence Code Pubs
Pwp2p-containing subcomplex of 90S preribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleolus IDA
Inferred from Direct Assay
more info
 
nucleoplasm TAS
Traceable Author Statement
more info
 
small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
U3 small nucleolar RNA-associated protein 6 homolog
Names
UTP6, small subunit (SSU) processome component, homolog
hepatocellular carcinoma-associated antigen 66
multiple hat domains protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_018428.3NP_060898.2  U3 small nucleolar RNA-associated protein 6 homolog

    See identical proteins and their annotated locations for NP_060898.2

    Status: VALIDATED

    Source sequence(s)
    AC004253, AF334386, BC015454, BC035325
    Consensus CDS
    CCDS11269.1
    UniProtKB/Swiss-Prot
    Q9NYH9
    Related
    ENSP00000261708.4, ENST00000261708.9
    Conserved Domains (2) summary
    COG5191
    Location:1222
    COG5191; Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
    pfam08640
    Location:981
    U3_assoc_6; U3 small nucleolar RNA-associated protein 6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    31860904..31901708 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011524997.3XP_011523299.1  U3 small nucleolar RNA-associated protein 6 homolog isoform X2

    Conserved Domains (2) summary
    COG5191
    Location:1222
    COG5191; Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
    pfam08640
    Location:981
    U3_assoc_6; U3 small nucleolar RNA-associated protein 6
  2. XM_017024845.2XP_016880334.1  U3 small nucleolar RNA-associated protein 6 homolog isoform X1

  3. XM_005258012.3XP_005258069.1  U3 small nucleolar RNA-associated protein 6 homolog isoform X3

RNA

  1. XR_001752562.2 RNA Sequence

  2. XR_001752560.2 RNA Sequence

  3. XR_001752561.2 RNA Sequence

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