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FOXJ2 forkhead box J2 [ Homo sapiens (human) ]

Gene ID: 55810, updated on 18-Aug-2020

Summary

Official Symbol
FOXJ2provided by HGNC
Official Full Name
forkhead box J2provided by HGNC
Primary source
HGNC:HGNC:24818
See related
Ensembl:ENSG00000065970
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FHX
Expression
Ubiquitous expression in endometrium (RPKM 8.4), ovary (RPKM 8.2) and 25 other tissues See more
Orthologs

Genomic context

See FOXJ2 in Genome Data Viewer
Location:
12p13.31
Exon count:
14
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (8032680..8055522)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (8185298..8208118)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene heat shock protein family D (Hsp60) member 1 pseudogene Neighboring gene heat shock protein family D (Hsp60) member 1 pseudogene 12 Neighboring gene complement C3a receptor 1 Neighboring gene NECAP endocytosis associated 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

HIV-1 interactions

Replication interactions

Interaction Pubs
Knockdown of forkhead box J2 (FOXJ2) by siRNA inhibits the early stages of HIV-1 replication in 293T cells infected with VSV-G pseudotyped HIV-1 PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
fibrillar center IDA
Inferred from Direct Assay
more info
 
nuclear chromatin ISA
Inferred from Sequence Alignment
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
forkhead box protein J2
Names
FOXJ2 forkhead factor
fork head homologous X

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_018416.3NP_060886.1  forkhead box protein J2

    See identical proteins and their annotated locations for NP_060886.1

    Status: VALIDATED

    Source sequence(s)
    AC006511, AF155132, AL161978, BC032608, CB243304
    Consensus CDS
    CCDS8587.1
    UniProtKB/Swiss-Prot
    Q9P0K8
    Related
    ENSP00000162391.3, ENST00000162391.8
    Conserved Domains (1) summary
    pfam00250
    Location:66143
    Forkhead; Forkhead domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    8032680..8055522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011520760.2XP_011519062.1  forkhead box protein J2 isoform X1

    See identical proteins and their annotated locations for XP_011519062.1

    Conserved Domains (1) summary
    pfam00250
    Location:66143
    Forkhead; Forkhead domain
  2. XM_011520761.2XP_011519063.1  forkhead box protein J2 isoform X1

    See identical proteins and their annotated locations for XP_011519063.1

    Conserved Domains (1) summary
    pfam00250
    Location:66143
    Forkhead; Forkhead domain
  3. XM_017019640.1XP_016875129.1  forkhead box protein J2 isoform X2

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