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hlfb HLF transcription factor, PAR bZIP family member b [ Danio rerio (zebrafish) ]

Gene ID: 557886, updated on 3-Oct-2019

Summary

Official Symbol
hlfbprovided by ZNC
Official Full Name
HLF transcription factor, PAR bZIP family member bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-110420-3
See related
Ensembl:ENSDARG00000061011
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
hlf2

Genomic context

See hlfb in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (32159217..32169270)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (32044314..32052312)
103 previous assembly Zv9 (GCF_000002035.4) 12 NC_007123.5 (33846354..33853203)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly homolog 11 (yeast) Neighboring gene syntaxin binding protein 4 Neighboring gene si:ch73-256g18.2 Neighboring gene transmembrane protein 100b

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
hepatic leukemia factor
Names
hepatic leukemia factor 2
hepatic leukemia factor b
zhlf2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001197059.1NP_001183988.1  hepatic leukemia factor

    See identical proteins and their annotated locations for NP_001183988.1

    Status: PROVISIONAL

    Source sequence(s)
    GU434295
    UniProtKB/TrEMBL
    E2E3F2
    Related
    ENSDARP00000127301.1, ENSDART00000153167.2
    Conserved Domains (1) summary
    cd14695
    Location:226285
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    32159217..32169270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005156334.4XP_005156391.1  hepatic leukemia factor isoform X1

    Conserved Domains (1) summary
    cd14695
    Location:230288
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain
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