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znf652 zinc finger protein 652 [ Danio rerio (zebrafish) ]

Gene ID: 557571, updated on 9-Sep-2025
Official Symbol
znf652provided by ZNC
Official Full Name
zinc finger protein 652provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5857
See related
Ensembl:ENSDARG00000062302 AllianceGenome:ZFIN:ZDB-GENE-030131-5857
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fi21c12; wu:fi21c12
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF652 (zinc finger protein 652). [provided by Alliance of Genome Resources, Jul 2025]
Orthologs
human mouse all
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Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2025_04 current GRCz12tu (GCF_049306965.1) 3 NC_133178.1 (14420587..14462329)
RS_2024_08 previous assembly GRCz11 (GCF_000002035.6) 3 NC_007114.7 (15755719..15797327)

Chromosome 3 - NC_133178.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137490042 Neighboring gene double C2-like domains, alpha Neighboring gene uncharacterized LOC798483 Neighboring gene uncharacterized LOC141381159 Neighboring gene major vault protein Neighboring gene prohibitin Neighboring gene phosphoethanolamine/phosphocholine phosphatase 1 Neighboring gene zgc:110779

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Related articles in PubMed

  1. Zebrafish Collagen Type I: Molecular and Biochemical Characterization of the Major Structural Protein in Bone and Skin. Gistelinck C, et al. Sci Rep, 2016 Feb 15. PMID 26876635, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
Preferred Names
zinc finger protein 652

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RefSeqs of Annotated Genomes: GCF_049306965.1-RS_2025_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz12tu Primary Assembly

Genomic

  1. NC_133178.1 Reference GRCz12tu Primary Assembly

    Range
    14420587..14462329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_680657.10 → XP_685749.4  zinc finger protein 652

    See identical proteins and their annotated locations for XP_685749.4

    UniProtKB/TrEMBL
    A0A8N7TAQ3, F1R8R5
    Related
    ENSDARP00000084356.5
    Conserved Domains (2) summary
    sd00017
    Location:409 → 429
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:477 → 500
    zf-H2C2_2; Zinc-finger double domain

RNA

  1. XR_012400878.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials