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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_008999.1 RefSeqGene
- Range
-
4993..196285
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001011649.3 → NP_001011649.1 CDK5 regulatory subunit-associated protein 2 isoform b
See identical proteins and their annotated locations for NP_001011649.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an in-frame exon in the coding region, compared to variant 1. The encoded isoform (b) is shorter compared to isoform a.
- Source sequence(s)
-
AF448860, BC136275, BX495012, BX537759, BX953750
- Consensus CDS
-
CCDS43871.1
- UniProtKB/Swiss-Prot
-
Q96SN8
- UniProtKB/TrEMBL
-
B9EG74
- Related
- ENSP00000353317.4, ENST00000360190.8
- Conserved Domains (3) summary
-
- cl14654
Location:289 → 497
- V_Alix_like; Protein-interacting V-domain of mammalian Alix and related domains
- COG0419
Location:105 → 667
- SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
- pfam07989
Location:61 → 129
- Cnn_1N; Centrosomin N-terminal motif 1
-
NM_001272039.2 → NP_001258968.1 CDK5 regulatory subunit-associated protein 2 isoform c
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame splice site and lacks three in-frame exons in the coding region, compared to variant 1. The encoded isoform (c) is shorter compared to isoform a.
- Source sequence(s)
-
AF448860, BC136275, BX495012, BX537708, BX953708
- Consensus CDS
-
CCDS75888.1
- UniProtKB/Swiss-Prot
-
Q96SN8
- UniProtKB/TrEMBL
- A0A0A0MRG9, B9EG74, Q7Z3M0
- Related
- ENSP00000354065.4, ENST00000360822.8
- Conserved Domains (2) summary
-
- cl14654
Location:289 → 497
- V_Alix_like; Protein-interacting V-domain of mammalian Alix and related domains
- pfam07989
Location:61 → 129
- Cnn_1N; Centrosomin N-terminal motif 1
-
NM_001410992.1 → NP_001397921.1 CDK5 regulatory subunit-associated protein 2 isoform d
Status: REVIEWED
- Source sequence(s)
-
AL138836, AL353736, AL391870, AL590642
- Consensus CDS
-
CCDS94468.1
- UniProtKB/TrEMBL
-
A0A8I5KXG0
-
NM_001410993.1 → NP_001397922.1 CDK5 regulatory subunit-associated protein 2 isoform e
Status: REVIEWED
- Source sequence(s)
-
AL138836, AL353736, AL391870, AL590642
- Consensus CDS
-
CCDS94470.1
-
NM_001410994.1 → NP_001397923.1 CDK5 regulatory subunit-associated protein 2 isoform f
Status: REVIEWED
- Source sequence(s)
-
AL138836, AL353736, AL391870, AL590642
- Consensus CDS
-
CCDS94469.1
- UniProtKB/TrEMBL
-
A0A8I5QKL1
-
NM_018249.6 → NP_060719.4 CDK5 regulatory subunit-associated protein 2 isoform a
See identical proteins and their annotated locations for NP_060719.4
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (a).
- Source sequence(s)
-
AF448860, AK122913, BX495012
- Consensus CDS
-
CCDS6823.1
- UniProtKB/Swiss-Prot
- Q96SN8, Q9UIW9
- UniProtKB/TrEMBL
-
B3KVI2
- Related
- ENSP00000343818.4, ENST00000349780.9
- Conserved Domains (3) summary
-
- cl14654
Location:289 → 497
- V_Alix_like; Protein-interacting V-domain of mammalian Alix and related domains
- COG0419
Location:105 → 667
- SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
- pfam07989
Location:61 → 129
- Cnn_1N; Centrosomin N-terminal motif 1
RNA
-
NR_073554.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses three alternate splice sites in internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AF448860, BC019577, BC143732, BX495012
- Related
-
ENST00000685866.1
-
NR_073555.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) uses an alternate splice site in an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AF448860, BC019577, BC143734, BQ428975, BX495012
- Related
-
ENST00000689688.1
-
NR_073556.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) uses two alternate splice sites in internal exons and contains an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AF448860, BC143755, BX471011, BX495012
- Related
-
ENST00000473282.6
-
NR_073557.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) uses an alternate splice site in an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AF448860, BC019577, BC143764, BX495012
- Related
-
ENST00000693386.1
-
NR_073558.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) uses two alternate splice sites in internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AF448860, BC143760, BX471011, BX495012
- Related
-
ENST00000480112.5
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000009.12 Reference GRCh38.p14 Primary Assembly
- Range
-
120388875..120580167 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047423589.1 → XP_047279545.1 CDK5 regulatory subunit-associated protein 2 isoform X6
-
XM_017014921.2 → XP_016870410.1 CDK5 regulatory subunit-associated protein 2 isoform X3
- Related
- ENSP00000510289.1, ENST00000687633.1
-
XM_047423587.1 → XP_047279543.1 CDK5 regulatory subunit-associated protein 2 isoform X4
-
XM_011518860.2 → XP_011517162.1 CDK5 regulatory subunit-associated protein 2 isoform X1
- Related
- ENSP00000508692.1, ENST00000687279.1
- Conserved Domains (2) summary
-
- cl14654
Location:289 → 497
- V_Alix_like; Protein-interacting V-domain of mammalian Alix and related domains
- pfam07989
Location:61 → 129
- Cnn_1N; Centrosomin N-terminal motif 1
-
XM_017014923.2 → XP_016870412.1 CDK5 regulatory subunit-associated protein 2 isoform X9
- Related
-
ENST00000688923.1
-
XM_006717185.2 → XP_006717248.1 CDK5 regulatory subunit-associated protein 2 isoform X7
- Conserved Domains (2) summary
-
- cl14654
Location:289 → 497
- V_Alix_like; Protein-interacting V-domain of mammalian Alix and related domains
- pfam07989
Location:61 → 129
- Cnn_1N; Centrosomin N-terminal motif 1
-
XM_047423588.1 → XP_047279544.1 CDK5 regulatory subunit-associated protein 2 isoform X5
-
XM_006717182.2 → XP_006717245.1 CDK5 regulatory subunit-associated protein 2 isoform X2
- UniProtKB/Swiss-Prot
-
Q96SN8
- Related
- ENSP00000400395.2, ENST00000416449.6
- Conserved Domains (3) summary
-
- cl14654
Location:289 → 497
- V_Alix_like; Protein-interacting V-domain of mammalian Alix and related domains
- COG0419
Location:105 → 667
- SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
- pfam07989
Location:61 → 129
- Cnn_1N; Centrosomin N-terminal motif 1
-
XM_047423590.1 → XP_047279546.1 CDK5 regulatory subunit-associated protein 2 isoform X8
-
XM_047423591.1 → XP_047279547.1 CDK5 regulatory subunit-associated protein 2 isoform X10
- Related
- ENSP00000508792.1, ENST00000690814.1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060933.1 Alternate T2T-CHM13v2.0
- Range
-
132583189..132774493 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)