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C1orf112 chromosome 1 open reading frame 112 [ Homo sapiens (human) ]

Gene ID: 55732, updated on 15-Jun-2019

Summary

Official Symbol
C1orf112provided by HGNC
Official Full Name
chromosome 1 open reading frame 112provided by HGNC
Primary source
HGNC:HGNC:25565
See related
Ensembl:ENSG00000000460
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 5.7), lymph node (RPKM 3.2) and 24 other tissues See more
Orthologs

Genomic context

See C1orf112 in Genome Data Viewer
Location:
1q24.2
Exon count:
29
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 1 NC_000001.11 (169794730..169854080)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (169763224..169822229)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene selectin E Neighboring gene uncharacterized LOC101928628 Neighboring gene methyltransferase like 18 Neighboring gene RNA, 7SL, cytoplasmic 333, pseudogene Neighboring gene SCY1 like pseudokinase 3 Neighboring gene VISTA enhancer hs1442 Neighboring gene kinesin associated protein 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ10706, FLJ13470, MGC130018, MGC130019

General protein information

Preferred Names
uncharacterized protein C1orf112

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001320047.2NP_001306976.1  uncharacterized protein C1orf112 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL031297, BC091516, DA770714, DC401980
    Consensus CDS
    CCDS1285.1
    UniProtKB/Swiss-Prot
    Q9NSG2
    UniProtKB/TrEMBL
    A0A024R922
    Related
    ENSP00000352276.4, ENST00000359326.9
    Conserved Domains (1) summary
    pfam14868
    Location:176728
    DUF4487; Domain of unknown function (DUF4487)
  2. NM_001320048.1NP_001306977.1  uncharacterized protein C1orf112 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK001568, AK303296, BC091516, DC401980
    UniProtKB/Swiss-Prot
    Q9NSG2
    UniProtKB/TrEMBL
    B4E0A9
    Conserved Domains (1) summary
    pfam14868
    Location:41593
    DUF4487; Domain of unknown function (DUF4487)
  3. NM_001320050.2NP_001306979.1  uncharacterized protein C1orf112 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AK096493, BC011012, BC011445, CB159947, DC401980
    Consensus CDS
    CCDS81400.1
    UniProtKB/Swiss-Prot
    Q9NSG2
    UniProtKB/TrEMBL
    A0A1B0GV14
    Related
    ENSP00000490333.1, ENST00000496973.5
  4. NM_001320051.1NP_001306980.1  uncharacterized protein C1orf112 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL354614, BC011445, BC091516, CB159947
    Consensus CDS
    CCDS81401.1
    UniProtKB/Swiss-Prot
    Q9NSG2
    UniProtKB/TrEMBL
    A0A1B0GUP7
    Related
    ENSP00000490194.1, ENST00000472795.5
  5. NM_001363739.1NP_001350668.1  uncharacterized protein C1orf112 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL021940, AL031297
    Consensus CDS
    CCDS86030.1
    Conserved Domains (1) summary
    pfam14868
    Location:1405
    DUF4487; Domain of unknown function (DUF4487)
  6. NM_001366768.1NP_001353697.1  uncharacterized protein C1orf112 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AL021940, AL031297
  7. NM_001366769.1NP_001353698.1  uncharacterized protein C1orf112 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AL021940, AL031297
    Conserved Domains (1) summary
    pfam14868
    Location:234786
    DUF4487; Domain of unknown function (DUF4487)
  8. NM_001366770.1NP_001353699.1  uncharacterized protein C1orf112 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AL021940, AL031297
  9. NM_001366771.1NP_001353700.1  uncharacterized protein C1orf112 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL021940, AL031297
    Conserved Domains (1) summary
    pfam14868
    Location:1405
    DUF4487; Domain of unknown function (DUF4487)
  10. NM_001366772.1NP_001353701.1  uncharacterized protein C1orf112 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL021940, AL031297
    Conserved Domains (1) summary
    pfam14868
    Location:1405
    DUF4487; Domain of unknown function (DUF4487)
  11. NM_001366773.1NP_001353702.1  uncharacterized protein C1orf112 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL021940, AL031297
    Conserved Domains (1) summary
    pfam14868
    Location:1405
    DUF4487; Domain of unknown function (DUF4487)

RNA

  1. NR_159440.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL021940, AL031297

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    169794730..169854080
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017001722.2XP_016857211.1  uncharacterized protein C1orf112 isoform X2

  2. XM_017001723.1XP_016857212.1  uncharacterized protein C1orf112 isoform X3

  3. XM_011509735.2XP_011508037.1  uncharacterized protein C1orf112 isoform X4

    See identical proteins and their annotated locations for XP_011508037.1

    UniProtKB/Swiss-Prot
    Q9NSG2
    Related
    ENSP00000389257.3, ENST00000413811.3
    Conserved Domains (1) summary
    pfam14868
    Location:1405
    DUF4487; Domain of unknown function (DUF4487)

RNA

  1. XR_921872.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_018186.3: Suppressed sequence

    Description
    NM_018186.3: This RefSeq has been removed because currently there is insufficient support for the transcript.
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