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IQCC IQ motif containing C [ Homo sapiens (human) ]

Gene ID: 55721, updated on 7-Jun-2020

Summary

Official Symbol
IQCCprovided by HGNC
Official Full Name
IQ motif containing Cprovided by HGNC
Primary source
HGNC:HGNC:25545
See related
Ensembl:ENSG00000160051
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 5.9), thyroid (RPKM 2.5) and 24 other tissues See more
Orthologs

Genomic context

See IQCC in Genome Data Viewer
Location:
1p35.2
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (32205671..32208682)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (32671236..32674288)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene taxilin alpha Neighboring gene coiled-coil domain containing 28B Neighboring gene transmembrane protein 234 Neighboring gene doublecortin domain containing 2B Neighboring gene eukaryotic translation initiation factor 3 subunit I

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ10547, MGC120341

General protein information

Preferred Names
IQ domain-containing protein C

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001160042.2NP_001153514.1  IQ domain-containing protein C isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK307853, AL049795, DB324323
    Consensus CDS
    CCDS53293.1
    UniProtKB/Swiss-Prot
    Q4KMZ1
    Related
    ENSP00000442291.1, ENST00000537469.2
  2. NM_018134.3NP_060604.2  IQ domain-containing protein C isoform 2

    See identical proteins and their annotated locations for NP_060604.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the coding region compared to variant 1. The encoded isoform (2) is shorter compared to isoform 1.
    Source sequence(s)
    AK223272, AL049795, DB324323
    Consensus CDS
    CCDS355.1
    UniProtKB/Swiss-Prot
    Q4KMZ1
    Related
    ENSP00000291358.6, ENST00000291358.10

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    32205671..32208682
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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