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cfp complement factor properdin [ Danio rerio (zebrafish) ]

Gene ID: 556399, updated on 16-Oct-2021

Summary

Official Symbol
cfpprovided by ZNC
Official Full Name
complement factor properdinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-9247
See related
Ensembl:ENSDARG00000094451
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fj10b08; ch:af064832; si:dkeyp-22b2.3
Orthologs
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Genomic context

See cfp in Genome Data Viewer
Location:
chromosome: 8
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (23672245..23688505, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (23651013..23667293, complement)
103 previous assembly Zv9 (GCF_000002035.4) 8 NC_007119.5 (24525190..24554628, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene si:ch73-237c6.1 Neighboring gene peroxisome proliferator-activated receptor delta b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

General protein information

Preferred Names
properdin; complement factor properdin
Names
zfp

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001160126.1NP_001153598.1  properdin precursor

    See identical proteins and their annotated locations for NP_001153598.1

    Status: PROVISIONAL

    Source sequence(s)
    BX469917
    UniProtKB/TrEMBL
    B0S697
    Related
    ENSDARP00000117151.1, ENSDART00000136865.3
    Conserved Domains (3) summary
    smart00209
    Location:127179
    TSP1; Thrombospondin type 1 repeats
    pfam00090
    Location:72120
    TSP_1; Thrombospondin type 1 domain
    cl15278
    Location:362437
    TSP_1; Thrombospondin type 1 domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    23672245..23688505 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005167038.4XP_005167095.1  complement factor properdin isoform X1

    See identical proteins and their annotated locations for XP_005167095.1

    UniProtKB/TrEMBL
    B0S697
    Conserved Domains (3) summary
    smart00209
    Location:127179
    TSP1; Thrombospondin type 1 repeats
    pfam00090
    Location:72120
    TSP_1; Thrombospondin type 1 domain
    cl15278
    Location:362437
    TSP_1; Thrombospondin type 1 domain
  2. XM_017357340.2XP_017212829.1  complement factor properdin isoform X1

    UniProtKB/TrEMBL
    B0S697
    Conserved Domains (3) summary
    smart00209
    Location:127179
    TSP1; Thrombospondin type 1 repeats
    pfam00090
    Location:72120
    TSP_1; Thrombospondin type 1 domain
    cl15278
    Location:362437
    TSP_1; Thrombospondin type 1 domain
  3. XM_005167041.4XP_005167098.1  complement factor properdin isoform X1

    See identical proteins and their annotated locations for XP_005167098.1

    UniProtKB/TrEMBL
    B0S697
    Conserved Domains (3) summary
    smart00209
    Location:127179
    TSP1; Thrombospondin type 1 repeats
    pfam00090
    Location:72120
    TSP_1; Thrombospondin type 1 domain
    cl15278
    Location:362437
    TSP_1; Thrombospondin type 1 domain
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