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mhc1zca major histocompatibility complex class I ZCA [ Danio rerio (zebrafish) ]

Gene ID: 556341, updated on 14-Feb-2019

Summary

Official Symbol
mhc1zcaprovided by ZNC
Official Full Name
major histocompatibility complex class I ZCAprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070424-4
See related
Ensembl:ENSDARG00000069471
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
dZ63M10.1; zgc:111893; zgc:136614; si:ch211-287j19.5

Genomic context

See mhc1zca in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (47140787..47151827, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (46449556..46460570, complement)
103 previous assembly Zv9 (GCF_000002035.4) 1 NC_007112.5 (47621727..47648918, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene major histocompatibility complex class I ZEA Neighboring gene major histocompatibility complex class I ZDA Neighboring gene uncharacterized LOC103909196 Neighboring gene major histocompatibility complex class I ZBA Neighboring gene carbonyl reductase 1

Genomic regions, transcripts, and products

General gene information

Homology

Clone Names

  • MGC111893

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
immune response IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
uncharacterized protein LOC556341
Names
MHC class I antigen ZCA
dZ63M10.1 (novel MHC class I antigen)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001083545.1NP_001077014.1  uncharacterized protein LOC556341 precursor

    See identical proteins and their annotated locations for NP_001077014.1

    Status: PREDICTED

    Source sequence(s)
    BC115196
    UniProtKB/TrEMBL
    A4FUM4
    Related
    ENSDARP00000063528.6, ENSDART00000063529.8
    Conserved Domains (2) summary
    cd07698
    Location:209303
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    cl08246
    Location:22205
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    47140787..47151827 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474930.1XP_021330605.1  uncharacterized protein LOC556341 isoform X1

    Related
    ENSDARP00000039383.7, ENSDART00000039459.8
    Conserved Domains (1) summary
    cl08246
    Location:22205
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2

RNA

  1. XR_002458102.1 RNA Sequence

  2. XR_002458104.1 RNA Sequence

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