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aass aminoadipate-semialdehyde synthase [ Danio rerio (zebrafish) ]

Gene ID: 556229, updated on 14-Feb-2019

Summary

Official Symbol
aassprovided by ZNC
Official Full Name
aminoadipate-semialdehyde synthaseprovided by ZNC
Primary source
ZFIN:ZDB-GENE-061220-8
See related
Ensembl:ENSDARG00000051816
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Orthologs

Genomic context

See aass in Genome Data Viewer
Location:
chromosome: 25
Exon count:
24
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (28279515..28333131)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (27836316..27889851)
103 previous assembly Zv9 (GCF_000002035.4) 25 NC_007136.5 (29146187..29199817)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene Ca++-dependent secretion activator 2 Neighboring gene FEZ family zinc finger 1 Neighboring gene protein tyrosine phosphatase receptor type Z1a Neighboring gene si:ch211-190o6.3

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
saccharopine dehydrogenase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
lysine biosynthetic process via aminoadipic acid IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
alpha-aminoadipic semialdehyde synthase, mitochondrial
NP_001167456.1
XP_005163173.1
XP_005163174.1
XP_021326170.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001173985.1NP_001167456.1  alpha-aminoadipic semialdehyde synthase, mitochondrial

    See identical proteins and their annotated locations for NP_001167456.1

    Status: VALIDATED

    Source sequence(s)
    CR752641
    UniProtKB/TrEMBL
    E7FD66
    Related
    ENSDARP00000140843.2, ENSDART00000164502.2
    Conserved Domains (4) summary
    PLN02819
    Location:32930
    PLN02819; lysine-ketoglutarate reductase/saccharopine dehydrogenase
    cd12189
    Location:32474
    LKR_SDH_like; bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme
    pfam03435
    Location:491607
    Sacchrp_dh_NADP; Saccharopine dehydrogenase NADP binding domain
    pfam16653
    Location:611924
    Sacchrp_dh_C; Saccharopine dehydrogenase C-terminal domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    28279515..28333131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005163117.4XP_005163174.1  alpha-aminoadipic semialdehyde synthase, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_005163174.1

    UniProtKB/TrEMBL
    E7FD66
    Conserved Domains (4) summary
    PLN02819
    Location:32930
    PLN02819; lysine-ketoglutarate reductase/saccharopine dehydrogenase
    cd12189
    Location:32474
    LKR_SDH_like; bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme
    pfam03435
    Location:491607
    Sacchrp_dh_NADP; Saccharopine dehydrogenase NADP binding domain
    pfam16653
    Location:611924
    Sacchrp_dh_C; Saccharopine dehydrogenase C-terminal domain
  2. XM_005163116.4XP_005163173.1  alpha-aminoadipic semialdehyde synthase, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_005163173.1

    UniProtKB/TrEMBL
    E7FD66
    Related
    ENSDARP00000067993.3, ENSDART00000073502.5
    Conserved Domains (4) summary
    PLN02819
    Location:32930
    PLN02819; lysine-ketoglutarate reductase/saccharopine dehydrogenase
    cd12189
    Location:32474
    LKR_SDH_like; bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme
    pfam03435
    Location:491607
    Sacchrp_dh_NADP; Saccharopine dehydrogenase NADP binding domain
    pfam16653
    Location:611924
    Sacchrp_dh_C; Saccharopine dehydrogenase C-terminal domain
  3. XM_021470495.1XP_021326170.1  alpha-aminoadipic semialdehyde synthase, mitochondrial isoform X2

    Conserved Domains (1) summary
    cl25613
    Location:3526
    Sacchrp_dh_C; Saccharopine dehydrogenase C-terminal domain
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