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fnta farnesyltransferase, CAAX box, alpha [ Danio rerio (zebrafish) ]

Gene ID: 555882, updated on 22-Nov-2020

Summary

Official Symbol
fntaprovided by ZNC
Official Full Name
farnesyltransferase, CAAX box, alphaprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-866
See related
Ensembl:ENSDARG00000099143
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:690942; im:6909421; wu:fb51d12; wu:fz92f09; zgc:158397
Orthologs

Genomic context

See fnta in Genome Data Viewer
Location:
chromosome: 14
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (3516560..3537129)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (3409254..3429823)
103 previous assembly Zv9 (GCF_000002035.4) 4 NC_007115.5 (29641585..29661822)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase pi 2 Neighboring gene glutathione S-transferase pi 1 Neighboring gene si:ch73-49o8.1 Neighboring gene LRP2 binding protein Neighboring gene sorting nexin 25

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
contributes_to CAAX-protein geranylgeranyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
contributes_to protein farnesyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
protein farnesylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein geranylgeranylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein prenylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
CAAX-protein geranylgeranyltransferase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein farnesyltransferase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
NP_001074029.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080560.2NP_001074029.1  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

    See identical proteins and their annotated locations for NP_001074029.1

    Status: VALIDATED

    Source sequence(s)
    BC129222, DN769643, EH436158, EH458859
    UniProtKB/TrEMBL
    A1L1V1
    Related
    ENSDARP00000133663.1, ENSDART00000158416.2
    Conserved Domains (2) summary
    PLN02789
    Location:44336
    PLN02789; farnesyltranstransferase
    pfam01239
    Location:163189
    PPTA; Protein prenyltransferase alpha subunit repeat

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    3516560..3537129
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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