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prorp protein only RNase P catalytic subunit [ Danio rerio (zebrafish) ]

Gene ID: 555630, updated on 27-Mar-2024

Summary

Official Symbol
prorpprovided by ZNC
Official Full Name
protein only RNase P catalytic subunitprovided by ZNC
Primary source
ZFIN:ZDB-GENE-100618-4
See related
Ensembl:ENSDARG00000075057 AllianceGenome:ZFIN:ZDB-GENE-100618-4
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
gb:dt074413; si:dkeyp-33b5.4
Summary
Predicted to enable ribonuclease P activity. Predicted to be involved in mitochondrial tRNA 5'-end processing and tRNA 5'-leader removal. Predicted to act upstream of or within tRNA processing. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial ribonuclease P complex. Orthologous to human PRORP (protein only RNase P catalytic subunit). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See prorp in Genome Data Viewer
Location:
chromosome: 17
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (12971304..13007008, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (12817238..12853204, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b Neighboring gene proteasome 20S subunit alpha 6a Neighboring gene protein phosphatase 2, regulatory subunit B'', gamma Neighboring gene family with sequence similarity 177 member A1 Neighboring gene F-box protein 33

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nuclease activity IEA
Inferred from Electronic Annotation
more info
 
enables ribonuclease P activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables ribonuclease P activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mitochondrial tRNA 5'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in tRNA 5'-leader removal IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within tRNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of mitochondrial ribonuclease P complex IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
mitochondrial ribonuclease P protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    12971304..13007008 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_678197.8XP_683289.3  mitochondrial ribonuclease P protein 3

    UniProtKB/TrEMBL
    A0A8N7TCQ5, X1WBZ5
    Related
    ENSDARP00000127737.1, ENSDART00000156812.2
    Conserved Domains (2) summary
    sd00004
    Location:215237
    PPR; PPR repeat [structural motif]
    pfam16953
    Location:338574
    PRORP; Protein-only RNase P